myRT

myRT report for GCA_900547945.1_UMGS1035

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Seq: URIT01000026.1 uncultured bacterium isolate UMGS1035 genome assembly, contig: NODE_1313_length_30422_cov_44.169921, whole genome shotgun sequence (30422 bp)
Overview 1 RT 1: 26984-29855 bp Neighborhood of RT #1 [26984, 30250] YfmG YfmG HRDC RVT-DGRs Feature: gene Location: 26984-28321 bp Feature: domain Description: YfmG Location: 27485-27761 bp Feature: domain Description: YfmG Location: 27485-27761 bp Feature: domain Description: YfmG Location: 27806-28286 bp Feature: domain Description: YfmG Location: 27806-28286 bp Feature: gene Location: 28449-29045 bp Feature: domain Description: HRDC Location: 28695-28893 bp Feature: domain Description: HRDC Location: 28695-28893 bp Feature: gene Location: 29042-30250 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29249-29855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29249-29855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), HRDC (smart00341), RVT-DGRs

Seq: URIT01000145.1 uncultured bacterium isolate UMGS1035 genome assembly, contig: NODE_6818_length_7290_cov_34.152039, whole genome shotgun sequence (7290 bp)
Overview 1 RT 1: 926-7124 bp Neighborhood of RT #1 [926, 7126] ispF Glyco_tran_WbsX RVT-GII GIIM gapA Feature: gene Location: 926-1402 bp Feature: domain Description: ispF Location: 929-1394 bp Feature: domain Description: ispF Location: 92 9-1394 bp Feature: gene Location: 1402-3999 bp Feature: domain Description: Glyco_tran_WbsX Location: 2611-3478 bp Feature: domain Description: Glyco_tran_WbsX Location: 2 611-3478 bp Feature: gene Location: 4433-5536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-5303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4685-5303 bp Feature: domain Description: GIIM Note: maturase Location: 5348-5525 bp Feature: domain Description: GIIM Note: maturase Location: 5348-552 5 bp Feature: gene Location: 6110-7126 bp Feature: domain Description: gapA Location: 6113-7124 bp Feature: domain Description: gapA Location: 6113-712 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_tran_WbsX (pfam14307), RVT-GII, GIIM (pfam08388), gapA (PRK15425), ispF (TIGR00151)

Seq: URIT01000207.1 uncultured bacterium isolate UMGS1035 genome assembly, contig: NODE_14553_length_3244_cov_41.866416, whole genome shotgun sequence (3244 bp)
Overview 1 RT 1: 197-3143 bp Neighborhood of RT #1 [197, 3143] SLR RVT-GII RVT-GII DUF2188 Feature: gene Location: 197-844 bp Feature: domain Description: SLR Location: 458-740 bp Feature: domain Description: SLR Location: 458-740 bp Feature: gene Location: 941-1141 bp Feature: gene Location: 1224-2342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977-2268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977-2268 bp Feature: gene Location: 2643-2876 bp Feature: domain Description: DUF2188 Location: 2661-2835 bp Feature: domain Description: DUF2188 Location: 2661-283 5 bp Feature: gene Location: 2970-3143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SLR (sd00010), DUF2188 (pfam09954)