myRT

myRT report for GCA_900548905.1_UMGS1134

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Seq: URMK01000003.1 uncultured Lachnospiraceae bacterium isolate UMGS1134 genome assembly, contig: NODE_9_length_231593_cov_16.395175, whole genome shotgun sequence (231593 bp)
Overview 1 RT 1: 146520-151896 bp 2 RT 2: 213413-217531 bp Neighborhood of RT #1 [146520, 151997] VOC_ShValD_like VOC_ShValD_like MPP_AQ1575 RVT-Retrons Flg_new Neighborhood of RT #2 [213413, 217531] COG3943 COG3943 RVT-UG7 Phage_int_SAM_4 Feature: gene Location: 146520-146957 bp Feature: domain Description: VOC_ShValD_like Location: 146544-146661 bp Feature: domain Description: VOC_ShValD_like Location: 1 46544-1 46661 bp Feature: domain Description: VOC_ShValD_like Location: 146670-146910 bp Feature: domain Description: VOC_ShValD_like Location: 1 46670-1 4691 0 bp Feature: gene Location: 147204-147821 bp Feature: domain Description: MPP_AQ1575 Location: 147210-147648 bp Feature: domain Description: MPP_AQ1 575 Location: 1 4721 0-1 47648 bp Feature: gene Location: 147838-148824 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 148006-148561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 48006-1 48561 bp Feature: gene Location: 149014-149157 bp Feature: gene Location: 149367-151997 bp Feature: domain Description: Flg_new Location: 151698-151896 bp Feature: domain Description: Flg_new Location: 1 51 698-1 51 896 bp Feature: gene Location: 213413-213688 bp Feature: domain Description: COG3943 Location: 213422-213677 bp Feature: domain Description: COG3943 Location: 21 3422-21 3677 bp Feature: gene Location: 213766-214416 bp Feature: domain Description: COG3943 Location: 213802-214339 bp Feature: domain Description: COG3943 Location: 21 3802-21 4339 bp Feature: gene Location: 214490-216088 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 214898-215309 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21 4898-21 5309 bp Feature: gene Location: 216675-217037 bp Feature: domain Description: Phage_int_SAM_4 Location: 216690-216942 bp Feature: domain Description: Phage_int_SAM_4 Location: 21 6690-21 6942 bp Feature: gene Location: 217151-217531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_ShValD_like (cd16361), MPP_AQ1575 (cd07390), RVT-Retrons, Flg_new (pfam09479), COG3943 (Uncharacterized conserved protein ), RVT-UG7, Phage_int_SAM_4 (pfam13495)

Seq: URMK01000023.1 uncultured Lachnospiraceae bacterium isolate UMGS1134 genome assembly, contig: NODE_77_length_92391_cov_14.022960, whole genome shotgun sequence (92391 bp)
Overview 1 RT 1: 52623-54873 bp Neighborhood of RT #1 [52623, 54873] RAYT RVT-GII RVT-GII RVT_N Feature: gene Location: 52623-52841 bp Feature: domain Description: RAYT Location: 52629-52815 bp Feature: domain Description: RAYT Location: 52 62 9-52 815 bp Feature: gene Location: 53121-53270 bp Feature: gene Location: 53342-53857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53348-53708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53348-53708 bp Feature: gene Location: 53857-54102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53860-54091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53860-54091 bp Feature: gene Location: 54232-54519 bp Feature: domain Description: RVT_N Location: 54316-54514 bp Feature: domain Description: RVT_N Location: 54316-54514 bp Feature: gene Location: 54712-54873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, RVT_N (pfam13655)