myRT

myRT report for GCA_900549105.1_UMGS1151

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Seq: URND01000009.1 uncultured Clostridiales bacterium isolate UMGS1151 genome assembly, contig: NODE_489_length_47538_cov_3.849083, whole genome shotgun sequence (47538 bp)
Overview 1 RT 1: 13868-22021 bp Neighborhood of RT #1 [13868, 22047] EPS_sugtrans DUF4180 RVT-GII HNHc recD_rel PRK13928 Feature: gene Location: 13868-15244 bp Feature: domain Description: EPS_sugtrans Location: 13994-15182 bp Feature: domain Description: EPS_sugtrans Location: 1 3994-1 51 82 bp Feature: gene Location: 15619-16023 bp Feature: domain Description: DUF4180 Location: 15688-16015 bp Feature: domain Description: DUF41 80 Location: 1 5688-1 601 5 bp Feature: gene Location: 16217-18247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16685-17420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6685-1 7420 bp Feature: domain Description: HNHc Note: nucleases Location: 17972-18095 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7972-1 8095 bp Feature: gene Location: 18924-20963 bp Feature: domain Description: recD_rel Location: 18939-20940 bp Feature: domain Description: recD_rel Location: 1 8939-20940 bp Feature: gene Location: 21022-22047 bp Feature: domain Description: PRK13928 Location: 21058-22021 bp Feature: domain Description: PRK1 3928 Location: 21 058-22021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EPS_sugtrans (TIGR03025), DUF4180 (pfam13788), RVT-GII, HNHc (smart00507), recD_rel (TIGR01448), PRK13928 (rod shape-determining protein Mbl; Provisional)

Seq: URND01000016.1 uncultured Clostridiales bacterium isolate UMGS1151 genome assembly, contig: NODE_719_length_35243_cov_3.990366, whole genome shotgun sequence (35243 bp)
Overview 1 RT 1: 26558-34222 bp Neighborhood of RT #1 [26558, 34275] TPR RVT-CRISPR cas1_HMARI Cas2_I_II_III COG1373 Feature: gene Location: 26558-28849 bp Feature: domain Description: TPR Location: 27902-28289 bp Feature: domain Description: TPR Location: 2 7902 -2 82 89 bp Feature: gene Location: 28842-29705 bp Feature: gene Location: 29724-31622 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29919-30534 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 9919-30534 bp Feature: domain Description: cas1_HMARI Location: 30639-31614 bp Feature: domain Description: cas1_HMARI Location: 30639-31614 bp Feature: gene Location: 31640-31999 bp Feature: domain Description: Cas2_I_II_III Location: 31748-31973 bp Feature: domain Description: Cas2 _I_II_III Location: 31748-31973 bp Feature: gene Location: 32914-34275 bp Feature: domain Description: COG1373 Location: 32929-34222 bp Feature: domain Description: COG1373 Location: 32 92 9-342 2 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-CRISPR, cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442), COG1373 (Predicted ATPase, AAA+ superfamily )