myRT

myRT report for GCA_900549205.1_UMGS1158

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Seq: URMV01000005.1 uncultured Lachnospiraceae bacterium isolate UMGS1158 genome assembly, contig: NODE_92_length_138196_cov_9.127646, whole genome shotgun sequence (138196 bp)
Overview 1 RT 1: 124627-129895 bp Neighborhood of RT #1 [124627, 129945] RVT-GII Intron_maturas2 Ferritin_like HsdM Feature: gene Location: 124627-124866 bp Feature: gene Location: 124888-125031 bp Feature: gene Location: 125038-126855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125302-126124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25302-1 261 24 bp Feature: domain Description: Intron_maturas2 Location: 126199-126502 bp Feature: domain Description: Intron_maturas2 Location: 1 261 99-1 26502 bp Feature: gene Location: 126970-128043 bp Feature: domain Description: Ferritin_like Location: 127417-127639 bp Feature: domain Description: Ferritin_like Location: 1 2741 7-1 27639 bp Feature: gene Location: 128371-129945 bp Feature: domain Description: HsdM Location: 128410-129895 bp Feature: domain Description: HsdM Location: 1 2841 0-1 29895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Ferritin_like (cl00264), HsdM (COG0286)

Seq: URMV01000007.1 uncultured Lachnospiraceae bacterium isolate UMGS1158 genome assembly, contig: NODE_94_length_135864_cov_7.423503, whole genome shotgun sequence (135864 bp)
Overview 1 RT 1: 112310-117626 bp Neighborhood of RT #1 [112310, 117626] DUF3801 T4SS-DNA_transf T4SS-DNA_transf RVT-GII VirD4 Feature: gene Location: 112310-112726 bp Feature: domain Description: DUF3801 Location: 112367-112709 bp Feature: domain Description: DUF3801 Location: 112 367-112 709 bp Feature: gene Location: 112759-113700 bp Feature: domain Description: T4SS-DNA_transf Location: 113239-113386 bp Feature: domain Description: T4SS-DNA_transf Location: 1132 39-113386 bp Feature: domain Description: T4SS-DNA_transf Location: 113470-113635 bp Feature: domain Description: T4SS-DNA_transf Location: 113470-113635 bp Feature: gene Location: 114325-116232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114655-115399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114655-115399 bp Feature: gene Location: 116380-117405 bp Feature: domain Description: VirD4 Location: 116515-117283 bp Feature: domain Description: VirD4 Location: 116515-1172 83 bp Feature: gene Location: 117402-117626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), T4SS-DNA_transf (pfam02534), RVT-GII, VirD4 (COG3505)

Seq: URMV01000009.1 uncultured Lachnospiraceae bacterium isolate UMGS1158 genome assembly, contig: NODE_154_length_94688_cov_7.080636, whole genome shotgun sequence (94688 bp)
Overview 1 RT 1: 93098-94688 bp Neighborhood of RT #1 [93098, 94687] RVT-GII GIIM Feature: gene Location: 93098-93271 bp Feature: gene Location: 93398-93559 bp Feature: gene Location: 93587-94687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93902-94526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 902-94526 bp Feature: domain Description: GIIM Note: maturase Location: 94583-94688 bp Feature: domain Description: GIIM Note: maturase Location: 94583 -94688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: URMV01000013.1 uncultured Lachnospiraceae bacterium isolate UMGS1158 genome assembly, contig: NODE_188_length_82550_cov_7.306480, whole genome shotgun sequence (82550 bp)
Overview 1 RT 1: 110-2965 bp Neighborhood of RT #1 [110, 2965] COG0610 RVT-Retrons Feature: gene Location: 110-820 bp Feature: domain Description: COG0610 Location: 200-782 bp Feature: domain Description: COG0610 Location: 200-782 bp Feature: gene Location: 1039-1377 bp Feature: gene Location: 1379-2392 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1601-2150 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1601-2150 bp Feature: gene Location: 2405-2590 bp Feature: gene Location: 2642-2965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons

Seq: URMV01000040.1 uncultured Lachnospiraceae bacterium isolate UMGS1158 genome assembly, contig: NODE_3035_length_7058_cov_6.008080, whole genome shotgun sequence (7058 bp)
Overview 1 RT 1: 1-6236 bp Neighborhood of RT #1 [1, 6236] Y2_Tnp RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like INT_RitA_C_like RVT-GII Feature: gene Location: 1-549 bp Feature: domain Description: Y2_Tnp Location: 22-316 bp Feature: domain Description: Y2_Tnp Location: 22-316 bp Feature: gene Location: 602-778 bp Feature: gene Location: 977-1489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980-1127 bp Feature: domain Description: GIIM Note: maturase Location: 1208-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1208-1430 bp Feature: gene Location: 1617-2636 bp Feature: domain Description: Phage_int_SAM_1 Location: 1677-1923 bp Feature: domain Description: Phage_int_SAM_1 Location: 1677-1923 bp Feature: domain Description: INT_RitC_C_like Location: 2010-2568 bp Feature: domain Description: INT_RitC_C_like Location: 2010-25 68 bp Feature: gene Location: 2629-3582 bp Feature: domain Description: INT_RitB_C_like Location: 2953-3523 bp Feature: domain Description: INT_RitB_C_like Location: 295 3-35 23 bp Feature: gene Location: 3579-4790 bp Feature: domain Description: INT_RitA_C_like Location: 4257-4755 bp Feature: domain Description: INT_RitA_C_like Location: 425 7-475 5 bp Feature: gene Location: 4856-5704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5147-5630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 147-5 630 bp Feature: gene Location: 5841-6005 bp Feature: gene Location: 6078-6236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y2_Tnp (pfam04986), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188)