myRT

myRT report for GCA_900549815.1_UMGS1236

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Seq: URPX01000003.1 uncultured Bacteroides sp. isolate UMGS1236 genome assembly, contig: NODE_15_length_231216_cov_9.779383, whole genome shotgun sequence (231216 bp)
Overview 1 RT 1: 188318-192143 bp Neighborhood of RT #1 [188318, 192143] OMP_b-brl RVT-CRISPR-like RVT-CRISPR-like Feature: gene Location: 188318-188767 bp Feature: gene Location: 188773-189417 bp Feature: domain Description: OMP_b-brl Location: 188815-189415 bp Feature: domain Description: OMP_b-brl Location: 1 8881 5-1 8941 5 bp Feature: gene Location: 190112-190969 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 190160-190544 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 901 60-1 90544 bp Feature: gene Location: 190917-191417 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 191124-191394 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 91 1 24-1 91 394 bp Feature: gene Location: 191562-191699 bp Feature: gene Location: 191952-192143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), RVT-CRISPR

Seq: URPX01000024.1 uncultured Bacteroides sp. isolate UMGS1236 genome assembly, contig: NODE_76_length_93040_cov_11.595053, whole genome shotgun sequence (93040 bp)
Overview 1 RT 1: 70701-74669 bp Neighborhood of RT #1 [70701, 74669] HTH_3 VirD4 RVT_N RVT-GII GIIM Feature: gene Location: 70701-71009 bp Feature: domain Description: HTH_3 Location: 70845-70998 bp Feature: domain Description: HTH_3 Location: 70845-70998 bp Feature: gene Location: 71058-72626 bp Feature: domain Description: VirD4 Location: 71703-72153 bp Feature: domain Description: VirD4 Location: 71703-72 153 bp Feature: gene Location: 72623-74278 bp Feature: domain Description: RVT_N Location: 72677-72920 bp Feature: domain Description: RVT_N Location: 72 677-72 92 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72965-73610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 965-73610 bp Feature: domain Description: GIIM Note: maturase Location: 73661-73895 bp Feature: domain Description: GIIM Note: maturase Location: 73661-73895 bp Feature: gene Location: 74332-74502 bp Feature: gene Location: 74523-74669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: URPX01000042.1 uncultured Bacteroides sp. isolate UMGS1236 genome assembly, contig: NODE_119_length_55682_cov_7.593687, whole genome shotgun sequence (55682 bp)
Overview 1 RT 1: 26331-31049 bp Neighborhood of RT #1 [26331, 31588] Hypoth_Ymh TraG-D_C RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 26331-27137 bp Feature: domain Description: Hypoth_Ymh Location: 26760-27114 bp Feature: domain Description: Hypoth_Ymh Location: 26760-27114 bp Feature: gene Location: 27168-28574 bp Feature: domain Description: TraG-D_C Location: 27948-28281 bp Feature: domain Description: TraG-D_C Location: 27948-28281 bp Feature: gene Location: 28577-30259 bp Feature: domain Description: RVT_N Location: 28649-28889 bp Feature: domain Description: RVT_N Location: 28649-28889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28937-29591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2893 7-29591 bp Feature: domain Description: GIIM Note: maturase Location: 29645-29876 bp Feature: domain Description: GIIM Note: maturase Location: 29645-29876 bp Feature: gene Location: 30381-30686 bp Feature: gene Location: 30866-31588 bp Feature: domain Description: YWFCY Location: 30872-31049 bp Feature: domain Description: YWFCY Location: 3 0872-3 1049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)

Seq: URPX01000106.1 uncultured Bacteroides sp. isolate UMGS1236 genome assembly, contig: NODE_1739_length_6159_cov_8.215596, whole genome shotgun sequence (6159 bp)
Overview 1 RT 1: 3-5945 bp Neighborhood of RT #1 [3, 6157] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Relaxase Relaxase Feature: gene Location: 3-515 bp Feature: gene Location: 577-1578 bp Feature: domain Description: TraG-D_C Location: 955-1288 bp Feature: domain Description: TraG-D_C Location: 955-1288 bp Feature: gene Location: 1542-3416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-2688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-2688 bp Feature: domain Description: Intron_maturas2 Location: 2760-3066 bp Feature: domain Description: Intron_maturas2 Location: 2760-3066 bp Feature: domain Description: HNHc Note: nucleases Location: 3237-3387 bp Feature: domain Description: HNHc Note: nucleases Location: 3237-3387 bp Feature: gene Location: 3885-5048 bp Feature: domain Description: YWFCY Location: 3891-4068 bp Feature: domain Description: YWFCY Location: 3891-4 068 bp Feature: gene Location: 5084-6157 bp Feature: domain Description: Relaxase Location: 5093-5447 bp Feature: domain Description: Relaxase Location: 5093-54 4 7 bp Feature: domain Description: Relaxase Location: 5651-5945 bp Feature: domain Description: Relaxase Location: 5651-594 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), Relaxase (pfam03432)