myRT

myRT report for GCA_900550755.1_UMGS1329

Download annotations/find similar RTs

Seq: URTE01000058.1 uncultured Marvinbryantia sp. isolate UMGS1329 genome assembly, contig: NODE_589_length_23953_cov_5.969705, whole genome shotgun sequence (23953 bp)
Overview 1 RT 1: 13928-17487 bp Neighborhood of RT #1 [13928, 17487] Phage_XkdX RVT-DGRs Avd_like Feature: gene Location: 13928-14080 bp Feature: gene Location: 14140-14295 bp Feature: domain Description: Phage_XkdX Location: 14173-14278 bp Feature: domain Description: Phage_XkdX Location: 1 41 73-1 4278 bp Feature: gene Location: 14412-15482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14595-15219 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 4595-1 521 9 bp Feature: gene Location: 15796-16215 bp Feature: domain Description: Avd_like Location: 15847-16174 bp Feature: domain Description: Avd_like Location: 1 5847-1 61 74 bp Feature: gene Location: 16261-17487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Avd_like (cd16376)

Seq: URTE01000126.1 uncultured Marvinbryantia sp. isolate UMGS1329 genome assembly, contig: NODE_1882_length_11362_cov_5.022818, whole genome shotgun sequence (11362 bp)
Overview 1 RT 1: 233-5276 bp Neighborhood of RT #1 [233, 5341] VirD4 RVT-GII VirD4 Feature: gene Location: 233-424 bp Feature: gene Location: 837-1952 bp Feature: domain Description: VirD4 Location: 843-1812 bp Feature: domain Description: VirD4 Location: 843-1812 bp Feature: gene Location: 2159-4033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2477-3221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 477-32 2 1 bp Feature: gene Location: 4021-4344 bp Feature: gene Location: 4655-5341 bp Feature: domain Description: VirD4 Location: 4856-5276 bp Feature: domain Description: VirD4 Location: 4856-52 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VirD4 (COG3505)

Seq: URTE01000208.1 uncultured Marvinbryantia sp. isolate UMGS1329 genome assembly, contig: NODE_10161_length_3193_cov_4.693117, whole genome shotgun sequence (3193 bp)
Overview 1 RT 1: 3-3190 bp Neighborhood of RT #1 [3, 3192] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf Feature: gene Location: 3-188 bp Feature: gene Location: 443-709 bp Feature: gene Location: 748-2565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-1831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012-183 1 bp Feature: domain Description: Intron_maturas2 Location: 1903-2206 bp Feature: domain Description: Intron_maturas2 Location: 1903 -2206 bp Feature: domain Description: HNHc Note: nucleases Location: 2386-2530 bp Feature: domain Description: HNHc Note: nucleases Location: 23 86-253 0 bp Feature: gene Location: 2656-3192 bp Feature: domain Description: T4SS-DNA_transf Location: 2674-3190 bp Feature: domain Description: T4SS-DNA_transf Location: 2674-3 190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)