myRT

myRT report for GCA_900550845.1_UMGS1340

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Seq: URTV01000062.1 uncultured Lachnobacterium sp. isolate UMGS1340 genome assembly, contig: NODE_1063_length_15897_cov_5.669991, whole genome shotgun sequence (15897 bp)
Overview 1 RT 1: 61-6067 bp Neighborhood of RT #1 [61, 6594] CwlA RVT-UG5 nitrilase PKc Feature: gene Location: 61-876 bp Feature: domain Description: CwlA Location: 127-670 bp Feature: domain Description: CwlA Location: 1 27-670 bp Feature: gene Location: 1025-4036 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1484-1931 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 484-1 931 bp Feature: domain Description: nitrilase Location: 3365-3935 bp Feature: domain Description: nitrilase Location: 3365-3935 bp Feature: gene Location: 4111-5328 bp Feature: gene Location: 5464-6594 bp Feature: domain Description: PKc Location: 5611-6067 bp Feature: domain Description: PKc Location: 561 1 -6067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CwlA (COG5632), RVT-UG5, nitrilase (cl11424), PKc (cd00180)

Seq: URTV01000159.1 uncultured Lachnobacterium sp. isolate UMGS1340 genome assembly, contig: NODE_3195_length_7374_cov_5.082662, whole genome shotgun sequence (7374 bp)
Overview 1 RT 1: 4934-7033 bp Neighborhood of RT #1 [4934, 7033] COG4584 RVT-GII Feature: gene Location: 4934-5434 bp Feature: domain Description: COG4584 Location: 5003-5360 bp Feature: domain Description: COG4584 Location: 5003-5360 bp Feature: gene Location: 5565-5699 bp Feature: gene Location: 5804-6688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6158-6656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6158-6656 bp Feature: gene Location: 6764-7033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII

Seq: URTV01000328.1 uncultured Lachnobacterium sp. isolate UMGS1340 genome assembly, contig: NODE_9352_length_3262_cov_9.421890, whole genome shotgun sequence (3262 bp)
Overview 1 RT 1: 713-3262 bp Neighborhood of RT #1 [713, 3261] RVT-GII T4SS-DNA_transf Feature: gene Location: 713-2620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043-1787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043 -1787 bp Feature: gene Location: 2779-3261 bp Feature: domain Description: T4SS-DNA_transf Location: 2812-3262 bp Feature: domain Description: T4SS-DNA_transf Location: 2812-3 262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: URTV01000346.1 uncultured Lachnobacterium sp. isolate UMGS1340 genome assembly, contig: NODE_10056_length_3083_cov_6.366579, whole genome shotgun sequence (3083 bp)
Overview 1 RT 1: 3-3081 bp Neighborhood of RT #1 [3, 3081] RVT-UG12 Feature: gene Location: 3-485 bp Feature: gene Location: 585-2297 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 966-1374 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 966-1374 bp Feature: gene Location: 2380-2832 bp Feature: gene Location: 2944-3081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12

Seq: URTV01000355.1 uncultured Lachnobacterium sp. isolate UMGS1340 genome assembly, contig: NODE_10698_length_2935_cov_6.022917, whole genome shotgun sequence (2935 bp)
Overview 1 RT 1: 2-2840 bp Neighborhood of RT #1 [2, 2845] RVT_N RVT-GII HipB COG2932 XRE Feature: gene Location: 2-1030 bp Feature: domain Description: RVT_N Location: 47-284 bp Feature: domain Description: RVT_N Location: 47-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335-983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335 -983 bp Feature: gene Location: 1857-2588 bp Feature: domain Description: HipB Location: 1869-2085 bp Feature: domain Description: HipB Location: 1869-2085 bp Feature: domain Description: COG2932 Location: 2241-2553 bp Feature: domain Description: COG2932 Location: 2241-25 5 3 bp Feature: gene Location: 2645-2845 bp Feature: domain Description: XRE Location: 2657-2840 bp Feature: domain Description: XRE Location: 265 7-2840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)