myRT

myRT report for GCA_900550975.1_UMGS1353

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Seq: URUG01000008.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_520_length_35268_cov_4.68165, whole genome shotgun sequence (35268 bp)
Overview 1 RT 1: 20353-24833 bp Neighborhood of RT #1 [20353, 25039] gp6 major_cap_HK97 RVT-GII Intron_maturas2 major_cap_HK97 S14_ClpP_1 Feature: gene Location: 20353-20625 bp Feature: domain Description: gp6 Location: 20362-20560 bp Feature: domain Description: gp6 Location: 20362-20560 bp Feature: gene Location: 20631-21422 bp Feature: domain Description: major_cap_HK97 Location: 20634-21408 bp Feature: domain Description: major_cap_HK97 Location: 20634-21 408 bp Feature: gene Location: 21549-23342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21816-22626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 81 6-22626 bp Feature: domain Description: Intron_maturas2 Location: 22695-22995 bp Feature: domain Description: Intron_maturas2 Location: 22695-22995 bp Feature: gene Location: 23881-24288 bp Feature: domain Description: major_cap_HK97 Location: 23899-24283 bp Feature: domain Description: major_cap_HK97 Location: 23899-24283 bp Feature: gene Location: 24305-25039 bp Feature: domain Description: S14_ClpP_1 Location: 24356-24833 bp Feature: domain Description: S1 4_ClpP_1 Location: 24356-24833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gp6 (cd08054), major_cap_HK97 (TIGR01554), RVT-GII, Intron_maturas2 (pfam01348), S14_ClpP_1 (cd07016)

Seq: URUG01000031.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_845_length_21583_cov_2.91337, whole genome shotgun sequence (21583 bp)
Overview 1 RT 1: 18658-21420 bp Neighborhood of RT #1 [18658, 21581] LT_GEWL_like PilZ RVT-GII GIIM Feature: gene Location: 18658-19341 bp Feature: domain Description: LT_GEWL_like Location: 18865-19174 bp Feature: domain Description: LT_GEWL_like Location: 18865-19174 bp Feature: gene Location: 19556-20188 bp Feature: domain Description: PilZ Location: 19859-20159 bp Feature: domain Description: PilZ Location: 19859-2 0159 bp Feature: gene Location: 20475-21581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20520-21141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 052 0-2 1141 bp Feature: domain Description: GIIM Note: maturase Location: 21195-21420 bp Feature: domain Description: GIIM Note: maturase Location: 2 1195-2 142 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LT_GEWL_like, PilZ (pfam07238), RVT-GII, GIIM (pfam08388)

Seq: URUG01000109.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_2192_length_8070_cov_3.54323, whole genome shotgun sequence (8070 bp)
Overview 1 RT 1: 3-3078 bp Neighborhood of RT #1 [3, 3086] DUF3791 RVT-Retrons OmpR BaeS Feature: gene Location: 3-149 bp Feature: gene Location: 152-355 bp Feature: domain Description: DUF3791 Location: 173-344 bp Feature: domain Description: DUF3 791 Location: 173 -3 44 bp Feature: gene Location: 359-1360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 524-1079 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 524-1079 bp Feature: gene Location: 1407-2096 bp Feature: domain Description: OmpR Location: 1419-2082 bp Feature: domain Description: OmpR Location: 1419-2082 bp Feature: gene Location: 2097-3086 bp Feature: domain Description: BaeS Location: 2322-3078 bp Feature: domain Description: BaeS Location: 23 22-3 078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3791 (pfam12668), RVT-Retrons, OmpR (COG0745), BaeS (COG0642)

Seq: URUG01000149.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_2820_length_6245_cov_2.53457, whole genome shotgun sequence (6245 bp)
Overview 1 RT 1: 1-4420 bp Neighborhood of RT #1 [1, 4428] RVT-GII RVT-GII RVT-GII GIIM ABC_trans_CmpB OmpR Feature: gene Location: 1-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 -631 bp Feature: gene Location: 1175-2140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-2036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-2036 bp Feature: gene Location: 2322-2906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2325-2466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2325-24 66 bp Feature: domain Description: GIIM Note: maturase Location: 2517-2745 bp Feature: domain Description: GIIM Note: maturase Location: 2517-274 5 bp Feature: gene Location: 3129-3722 bp Feature: domain Description: ABC_trans_CmpB Location: 3180-3639 bp Feature: domain Description: ABC_trans_CmpB Location: 3180-3639 bp Feature: gene Location: 3757-4428 bp Feature: domain Description: OmpR Location: 3760-4420 bp Feature: domain Description: OmpR Location: 3760-4 4 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ABC_trans_CmpB (pfam06541), OmpR (COG0745)

Seq: URUG01000266.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_4997_length_3491_cov_4.20576, whole genome shotgun sequence (3491 bp)
Overview 1 RT 1: 3-3334 bp Neighborhood of RT #1 [3, 3450] COG1373 RVT-GII HNHc Feature: gene Location: 3-575 bp Feature: domain Description: COG1373 Location: 9-564 bp Feature: domain Description: COG1373 Location: 9-5 64 bp Feature: gene Location: 670-945 bp Feature: gene Location: 1564-3450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1897-2635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1897-2635 bp Feature: domain Description: HNHc Note: nucleases Location: 3172-3334 bp Feature: domain Description: HNHc Note: nucleases Location: 3172-3334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, HNHc (smart00507)

Seq: URUG01000276.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_5186_length_3363_cov_3.12727, whole genome shotgun sequence (3363 bp)
Overview 1 RT 1: 439-3283 bp Neighborhood of RT #1 [439, 3360] COG3547 RVT-GII GIIM Feature: gene Location: 439-654 bp Feature: gene Location: 673-1962 bp Feature: domain Description: COG3547 Location: 730-1873 bp Feature: domain Description: COG3547 Location: 730-1873 bp Feature: gene Location: 2158-3360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2305-2998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2305-2998 bp Feature: domain Description: GIIM Note: maturase Location: 3064-3283 bp Feature: domain Description: GIIM Note: maturase Location: 306 4-3283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: URUG01000318.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_5990_length_2906_cov_1.59032, whole genome shotgun sequence (2906 bp)
Overview 1 RT 1: 203-2425 bp Neighborhood of RT #1 [203, 2532] Avd_like RVT-DGRs DUF16 Feature: gene Location: 203-538 bp Feature: domain Description: Avd_like Location: 221-527 bp Feature: domain Description: Avd_like Location: 221-527 bp Feature: gene Location: 564-854 bp Feature: gene Location: 856-1962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1060-1798 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1060-17 98 bp Feature: gene Location: 1970-2182 bp Feature: gene Location: 2224-2532 bp Feature: domain Description: DUF16 Location: 2239-2425 bp Feature: domain Description: DUF16 Location: 2239-2425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF16 (pfam01519)

Seq: URUG01000385.1 uncultured Lachnospiraceae bacterium isolate UMGS1353 genome assembly, contig: NODE_7513_length_2306_cov_2.72235, whole genome shotgun sequence (2306 bp)
Overview 1 RT 1: 108-2180 bp Neighborhood of RT #1 [108, 2305] RVT-GII Acetyltransf_10 Feature: gene Location: 108-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1053 bp Feature: gene Location: 1616-1798 bp Feature: gene Location: 1895-2305 bp Feature: domain Description: Acetyltransf_10 Location: 1916-2180 bp Feature: domain Description: Acetyltransf_10 Location: 1916-218 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_10 (pfam13673)