myRT

myRT report for GCA_900551285.1_UMGS1391

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Seq: URVT01000005.1 uncultured Solobacterium sp. isolate UMGS1391 genome assembly, contig: NODE_674_length_20412_cov_2.882841, whole genome shotgun sequence (20412 bp)
Overview 1 RT 1: 3-5342 bp Neighborhood of RT #1 [3, 5380] mycofact_OYE_2 RVT-GII GIIM NfsA_FRP DUF975 ABC_trans_CmpB Feature: gene Location: 3-971 bp Feature: domain Description: mycofact_OYE_2 Location: 12-969 bp Feature: domain Description: mycofact_OYE_2 Location: 1 2-969 bp Feature: gene Location: 1242-1406 bp Feature: gene Location: 1541-2839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742-2360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 742-2360 bp Feature: domain Description: GIIM Note: maturase Location: 2414-2621 bp Feature: domain Description: GIIM Note: maturase Location: 241 4-2621 bp Feature: gene Location: 2934-3659 bp Feature: domain Description: NfsA_FRP Location: 2955-3636 bp Feature: domain Description: NfsA_FRP Location: 2955-3636 bp Feature: gene Location: 3710-5380 bp Feature: domain Description: DUF975 Location: 3713-4508 bp Feature: domain Description: DUF975 Location: 371 3-4508 bp Feature: domain Description: ABC_trans_CmpB Location: 4883-5342 bp Feature: domain Description: ABC_trans_CmpB Location: 4883-5342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NfsA_FRP, DUF975 (pfam06161), ABC_trans_CmpB (pfam06541), mycofact_OYE_2 (TIGR03997)

Seq: URVT01000098.1 uncultured Solobacterium sp. isolate UMGS1391 genome assembly, contig: NODE_2674_length_7948_cov_3.239833, whole genome shotgun sequence (7948 bp)
Overview 1 RT 1: 5033-7839 bp Neighborhood of RT #1 [5033, 7946] CitA BaeS OmpR RVT-GII GIIM Feature: gene Location: 5033-6448 bp Feature: domain Description: CitA Location: 5057-5195 bp Feature: domain Description: CitA Location: 5057-5195 bp Feature: domain Description: BaeS Location: 5522-6371 bp Feature: domain Description: BaeS Location: 552 2 -6371 bp Feature: gene Location: 6510-7169 bp Feature: domain Description: OmpR Location: 6525-7164 bp Feature: domain Description: OmpR Location: 652 5-7164 bp Feature: gene Location: 7272-7946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7275-7566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 75-7566 bp Feature: domain Description: GIIM Note: maturase Location: 7635-7839 bp Feature: domain Description: GIIM Note: maturase Location: 7635-7839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitA (COG3290), BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: URVT01000120.1 uncultured Solobacterium sp. isolate UMGS1391 genome assembly, contig: NODE_3125_length_7090_cov_3.070647, whole genome shotgun sequence (7090 bp)
Overview 1 RT 1: 175-5275 bp Neighborhood of RT #1 [175, 5286] HscC_like_NBD RVT-GII RhaT Feature: gene Location: 175-1914 bp Feature: domain Description: HscC_like_NBD Location: 187-1189 bp Feature: domain Description: HscC_like_NBD Location: 187-1189 bp Feature: gene Location: 1923-2204 bp Feature: gene Location: 2350-3615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599-3262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599-3 262 bp Feature: gene Location: 4162-4362 bp Feature: gene Location: 4405-5286 bp Feature: domain Description: RhaT Location: 4408-5275 bp Feature: domain Description: RhaT Location: 4408-5275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HscC_like_NBD (cd10235), RVT-GII, RhaT (TIGR00776)

Seq: URVT01000130.1 uncultured Solobacterium sp. isolate UMGS1391 genome assembly, contig: NODE_3351_length_6694_cov_2.176683, whole genome shotgun sequence (6694 bp)
Overview 1 RT 1: 4982-6450 bp Neighborhood of RT #1 [4982, 6692] Acetyltransf_10 RVT-Retrons Feature: gene Location: 4982-5368 bp Feature: gene Location: 5386-5931 bp Feature: domain Description: Acetyltransf_10 Location: 5458-5839 bp Feature: domain Description: Acetyltransf_10 Location: 54 58-5839 bp Feature: gene Location: 6000-6692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6009-6450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6009-64 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-Retrons

Seq: URVT01000271.1 uncultured Solobacterium sp. isolate UMGS1391 genome assembly, contig: NODE_5574_length_4331_cov_3.618569, whole genome shotgun sequence (4331 bp)
Overview 1 RT 1: 3-3331 bp Neighborhood of RT #1 [3, 3699] M3B_PepF RVT-GII GIIM Feature: gene Location: 3-293 bp Feature: gene Location: 382-2142 bp Feature: domain Description: M3B_PepF Location: 397-2125 bp Feature: domain Description: M3B_PepF Location: 397-2125 bp Feature: gene Location: 2299-3699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2527-3151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 27-315 1 bp Feature: domain Description: GIIM Note: maturase Location: 3220-3331 bp Feature: domain Description: GIIM Note: maturase Location: 3220-3331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), M3B_PepF (cd09610)

Seq: URVT01000366.1 uncultured Solobacterium sp. isolate UMGS1391 genome assembly, contig: NODE_6841_length_3574_cov_3.306053, whole genome shotgun sequence (3574 bp)
Overview 1 RT 1: 3-2319 bp Neighborhood of RT #1 [3, 2327] RVT-GII PRK15065 EIID-AGA Feature: gene Location: 3-677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 -297 bp Feature: gene Location: 777-1553 bp Feature: domain Description: PRK15065 Location: 780-1512 bp Feature: domain Description: PRK1506 5 Location: 780-1512 bp Feature: gene Location: 1563-2327 bp Feature: domain Description: EIID-AGA Location: 1569-2319 bp Feature: domain Description: EIID-AGA Location: 156 9-2319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EIID-AGA (TIGR00828), RVT-GII, PRK15065 (mannose/fructose/sorbose family PTS transporter subunit IIC)