myRT

myRT report for GCA_900551775.1_UMGS1437

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Seq: URXI01000111.1 uncultured Eubacterium sp. isolate UMGS1437 genome assembly, contig: NODE_954_length_11598_cov_2.314650, whole genome shotgun sequence (11598 bp)
Overview 1 RT 1: 1-4984 bp Neighborhood of RT #1 [1, 5007] TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE VirB4_CagE Feature: gene Location: 1-384 bp Feature: gene Location: 387-1457 bp Feature: domain Description: TraC-F-type Location: 558-1347 bp Feature: domain Description: TraC-F-type Location: 558-1 347 bp Feature: gene Location: 1375-3078 bp Feature: domain Description: RVT_N Location: 1477-1720 bp Feature: domain Description: RVT_N Location: 1 477-1 720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1765-2425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 765-2425 bp Feature: domain Description: GIIM Note: maturase Location: 2479-2713 bp Feature: domain Description: GIIM Note: maturase Location: 2479-271 3 bp Feature: gene Location: 3271-3453 bp Feature: gene Location: 3583-5007 bp Feature: domain Description: VirB4_CagE Location: 3625-4027 bp Feature: domain Description: VirB4_CagE Location: 3625-4027 bp Feature: domain Description: VirB4_CagE Location: 4243-4984 bp Feature: domain Description: VirB4_CagE Location: 4243-4984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929)

Seq: URXI01000123.1 uncultured Eubacterium sp. isolate UMGS1437 genome assembly, contig: NODE_1008_length_11088_cov_2.411946, whole genome shotgun sequence (11088 bp)
Overview 1 RT 1: 2-5869 bp Neighborhood of RT #1 [2, 5869] RVT-AbiA HEPN_AbiA_CTD COG0610 Feature: gene Location: 2-268 bp Feature: gene Location: 321-551 bp Feature: gene Location: 614-2488 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 962-1487 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 962 -1487 bp Feature: domain Description: HEPN_AbiA_CTD Location: 2084-2474 bp Feature: domain Description: HEPN_AbiA_CTD Location: 2 084-2 474 bp Feature: gene Location: 2506-5475 bp Feature: domain Description: COG0610 Location: 2614-5320 bp Feature: domain Description: COG0610 Location: 2 614-532 0 bp Feature: gene Location: 5468-5869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, HEPN_AbiA_CTD (pfam18732), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: URXI01000217.1 uncultured Eubacterium sp. isolate UMGS1437 genome assembly, contig: NODE_1609_length_7397_cov_1.923999, whole genome shotgun sequence (7397 bp)
Overview 1 RT 1: 1034-6898 bp Neighborhood of RT #1 [1034, 6898] PrgI RVT-GII GIIM HNHc TraC-F-type Feature: gene Location: 1034-1438 bp Feature: domain Description: PrgI Location: 1049-1322 bp Feature: domain Description: PrgI Location: 1049-13 22 bp Feature: gene Location: 1386-2387 bp Feature: gene Location: 3084-5000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3450-4146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 450-4146 bp Feature: domain Description: GIIM Note: maturase Location: 4215-4434 bp Feature: domain Description: GIIM Note: maturase Location: 4215-443 4 bp Feature: domain Description: HNHc Note: nucleases Location: 4737-4848 bp Feature: domain Description: HNHc Note: nucleases Location: 473 7-4848 bp Feature: gene Location: 5004-6308 bp Feature: domain Description: TraC-F-type Location: 5127-6258 bp Feature: domain Description: TraC-F-type Location: 5127-6258 bp Feature: gene Location: 6698-6898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraC-F-type (TIGR02746)

Seq: URXI01000259.1 uncultured Eubacterium sp. isolate UMGS1437 genome assembly, contig: NODE_1984_length_6164_cov_2.574562, whole genome shotgun sequence (6164 bp)
Overview 1 RT 1: 3-3183 bp Neighborhood of RT #1 [3, 3183] RVT-GII GIIM CSP_CDS Feature: gene Location: 3-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 -738 bp Feature: domain Description: GIIM Note: maturase Location: 795-1005 bp Feature: domain Description: GIIM Note: maturase Location: 795-1005 bp Feature: gene Location: 1506-1859 bp Feature: domain Description: CSP_CDS Location: 1527-1692 bp Feature: domain Description: CSP_CDS Location: 1527-1692 bp Feature: gene Location: 1906-3183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CSP_CDS (cd04458)

Seq: URXI01000428.1 uncultured Eubacterium sp. isolate UMGS1437 genome assembly, contig: NODE_4361_length_3039_cov_2.323056, whole genome shotgun sequence (3039 bp)
Overview 1 RT 1: 2-2915 bp Neighborhood of RT #1 [2, 3037] RVT-GII GIIM DDE_Tnp_ISL3 Feature: gene Location: 2-148 bp Feature: gene Location: 582-1904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819-1434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 819-1434 bp Feature: domain Description: GIIM Note: maturase Location: 1491-1719 bp Feature: domain Description: GIIM Note: maturase Location: 1491-1719 bp Feature: gene Location: 1955-3037 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2054-2915 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 205 4-2915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610)

Seq: URXI01000449.1 uncultured Eubacterium sp. isolate UMGS1437 genome assembly, contig: NODE_5172_length_2627_cov_2.420295, whole genome shotgun sequence (2627 bp)
Overview 1 RT 1: 1-1269 bp Neighborhood of RT #1 [1, 2243] RVT-Retrons Feature: gene Location: 1-477 bp Feature: gene Location: 540-2243 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 666-1269 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6 6 6 -126 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons