myRT

myRT report for GCA_900551985.1_UMGS1464

Download annotations/find similar RTs

Seq: URYG01000044.1 uncultured Prevotella sp. isolate UMGS1464 genome assembly, contig: NODE_138_length_17941_cov_5.92184, whole genome shotgun sequence (17941 bp)
Overview 1 RT 1: 4976-9783 bp Neighborhood of RT #1 [4976, 9872] RVT_N RVT-GII GIIM SlpA Feature: gene Location: 4976-5428 bp Feature: gene Location: 5827-6213 bp Feature: gene Location: 7196-8701 bp Feature: RT Description: RVT_N Location: 7262-7505 bp Feature: RT Description: RVT_N Location: 7262-7505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7550-8192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7550-81 92 bp Feature: domain Description: GIIM Note: maturase Location: 8252-8483 bp Feature: domain Description: GIIM Note: maturase Location: 8252-8483 bp Feature: gene Location: 8842-9126 bp Feature: gene Location: 9276-9872 bp Feature: domain Description: SlpA Location: 9291-9783 bp Feature: domain Description: SlpA Location: 9291 -9783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SlpA (COG1047)

Seq: URYG01000190.1 uncultured Prevotella sp. isolate UMGS1464 genome assembly, contig: NODE_972_length_6149_cov_3.23548, whole genome shotgun sequence (6149 bp)
Overview 1 RT 1: 2926-6124 bp Neighborhood of RT #1 [2926, 6147] Avd_like RVT-DGRs XerC Feature: gene Location: 2926-3333 bp Feature: domain Description: Avd_like Location: 2962-3280 bp Feature: domain Description: Avd_like Location: 2 962 -32 80 bp Feature: gene Location: 3393-3584 bp Feature: gene Location: 3590-4909 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3773-4535 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3773-4535 bp Feature: gene Location: 4966-6147 bp Feature: domain Description: XerC Location: 5332-6124 bp Feature: domain Description: XerC Location: 5332 -612 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XerC (COG4973)