myRT

myRT report for GCA_900553075.1_UMGS1581

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Seq: USCD01000165.1 uncultured Lachnobacterium sp. isolate UMGS1581 genome assembly, contig: NODE_2501_length_6668_cov_3.707697, whole genome shotgun sequence (6668 bp)
Overview 1 RT 1: 5361-6641 bp Neighborhood of RT #1 [5361, 6667] HTH_Tnp_1 RVT-UG2 Feature: gene Location: 5361-5708 bp Feature: domain Description: HTH_Tnp_1 Location: 5370-5583 bp Feature: domain Description: HTH_Tnp_1 Location: 5370-5583 bp Feature: gene Location: 5968-6219 bp Feature: gene Location: 6242-6667 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6479-6641 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 6479-6641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-UG2

Seq: USCD01000246.1 uncultured Lachnobacterium sp. isolate UMGS1581 genome assembly, contig: NODE_3369_length_5140_cov_4.478269, whole genome shotgun sequence (5140 bp)
Overview 1 RT 1: 2081-5034 bp Neighborhood of RT #1 [2081, 5138] WrbA RVT-GII GIIM Acetyltransf_1 Feature: gene Location: 2081-2623 bp Feature: domain Description: WrbA Location: 2093-2423 bp Feature: domain Description: WrbA Location: 2 093-2 42 3 bp Feature: gene Location: 2941-3147 bp Feature: gene Location: 3198-4496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3453-4146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3453-4146 bp Feature: domain Description: GIIM Note: maturase Location: 4206-4425 bp Feature: domain Description: GIIM Note: maturase Location: 42 06-442 5 bp Feature: gene Location: 4602-5138 bp Feature: domain Description: Acetyltransf_1 Location: 4782-5034 bp Feature: domain Description: Acetyltransf_1 Location: 4782 -5034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WrbA (COG0655), RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583)

Seq: USCD01000384.1 uncultured Lachnobacterium sp. isolate UMGS1581 genome assembly, contig: NODE_5025_length_3601_cov_3.819797, whole genome shotgun sequence (3601 bp)
Overview 1 RT 1: 1-3514 bp Neighborhood of RT #1 [1, 3600] Glyco_hydro_3_C PLN03080 RVT-GII GIIM GH43_XYL-like Feature: gene Location: 1-1506 bp Feature: domain Description: Glyco_hydro_3_C Location: 160-1252 bp Feature: domain Description: Glyco_hydro_3 _C Location: 160-1252 bp Feature: domain Description: PLN03080 Location: 1303-1483 bp Feature: domain Description: PLN03 080 Location: 13 03 -1483 bp Feature: gene Location: 1487-2752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1691-2351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1691-23 51 bp Feature: domain Description: GIIM Note: maturase Location: 2435-2666 bp Feature: domain Description: GIIM Note: maturase Location: 243 5-2666 bp Feature: gene Location: 2763-3116 bp Feature: gene Location: 3292-3600 bp Feature: domain Description: GH43_XYL-like Location: 3319-3514 bp Feature: domain Description: GH43 _XYL-like Location: 3 3 19-3 514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_3_C (pfam01915), PLN03080 (Probable beta-xylosidase; Provisional), RVT-GII, GIIM (pfam08388), GH43_XYL-like (cd09002)

Seq: USCD01000742.1 uncultured Lachnobacterium sp. isolate UMGS1581 genome assembly, contig: NODE_9723_length_2047_cov_2.771084, whole genome shotgun sequence (2047 bp)
Overview 1 RT 1: 62-1847 bp Neighborhood of RT #1 [62, 1885] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 62-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-1148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-114 8 bp Feature: domain Description: Intron_maturas2 Location: 1322-1565 bp Feature: domain Description: Intron_maturas2 Location: 1322-1565 bp Feature: domain Description: HNHc Note: nucleases Location: 1676-1847 bp Feature: domain Description: HNHc Note: nucleases Location: 1676-184 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)