myRT

myRT report for GCA_900553325.1_UMGS1607

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Seq: USDG01000001.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_91_length_58333_cov_9.622533, whole genome shotgun sequence (58333 bp)
Overview 1 RT 1: 41547-43587 bp Neighborhood of RT #1 [41547, 43587] RVT-DGRs Feature: gene Location: 41547-41675 bp Feature: gene Location: 41703-41837 bp Feature: gene Location: 41870-42922 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42077-42758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42077-42758 bp Feature: gene Location: 43007-43321 bp Feature: gene Location: 43351-43587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: USDG01000006.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_167_length_44405_cov_6.507892, whole genome shotgun sequence (44405 bp)
Overview 1 RT 1: 7423-13382 bp Neighborhood of RT #1 [7423, 13426] VirD4 RVT-GII T4SS-DNA_transf DUF3801 Feature: gene Location: 7423-7587 bp Feature: gene Location: 7606-9003 bp Feature: domain Description: VirD4 Location: 7615-8725 bp Feature: domain Description: VirD4 Location: 7615-872 5 bp Feature: gene Location: 9137-10942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9395-10109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9395-10109 bp Feature: gene Location: 11681-12220 bp Feature: domain Description: T4SS-DNA_transf Location: 11921-12158 bp Feature: domain Description: T4SS-DNA_transf Location: 1192 1-12 158 bp Feature: gene Location: 12263-13426 bp Feature: domain Description: DUF3801 Location: 12362-13382 bp Feature: domain Description: DUF3801 Location: 12 362 -13382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII

Seq: USDG01000026.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_380_length_24549_cov_7.863967, whole genome shotgun sequence (24549 bp)
Overview 1 RT 1: 4286-17025 bp Neighborhood of RT #1 [4286, 17174] Peptidase_M78 LPD18 LPD16 LPD16 Polbeta HepA RVT-GII Intron_maturas2 HNHc YtxK COG4646 Feature: gene Location: 4286-6964 bp Feature: domain Description: Peptidase_M78 Location: 4817-5027 bp Feature: domain Description: Peptidase_M78 Location: 4817-5027 bp Feature: domain Description: LPD18 Location: 5237-5480 bp Feature: domain Description: LPD18 Location: 523 7-5480 bp Feature: domain Description: LPD16 Location: 5534-5777 bp Feature: domain Description: LPD16 Location: 553 4-5777 bp Feature: domain Description: LPD16 Location: 5831-6059 bp Feature: domain Description: LPD16 Location: 583 1-6059 bp Feature: domain Description: Polbeta Location: 6227-6458 bp Feature: domain Description: Polbeta Location: 6227-6458 bp Feature: gene Location: 7005-8465 bp Feature: domain Description: HepA Location: 7299-7551 bp Feature: domain Description: HepA Location: 7299-7551 bp Feature: gene Location: 8594-10381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8864-9656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8864-9656 bp Feature: domain Description: Intron_maturas2 Location: 9761-9977 bp Feature: domain Description: Intron_maturas2 Location: 9761-9977 bp Feature: domain Description: HNHc Note: nucleases Location: 10157-10343 bp Feature: domain Description: HNHc Note: nucleases Location: 10157-103 43 bp Feature: gene Location: 10456-10701 bp Feature: gene Location: 10872-17174 bp Feature: domain Description: YtxK Location: 13719-14577 bp Feature: domain Description: YtxK Location: 13 719-14577 bp Feature: domain Description: COG4646 Location: 14649-17025 bp Feature: domain Description: COG4646 Location: 14649-17025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), Peptidase_M78 (pfam06114), LPD18 (pfam18832), LPD16 (pfam18830), Polbeta (pfam18765), HepA (COG0553), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: USDG01000079.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_752_length_13504_cov_6.433266, whole genome shotgun sequence (13504 bp)
Overview 1 RT 1: 5223-10234 bp Neighborhood of RT #1 [5223, 10437] truA YjiL RVT-Retrons PRK07726 Feature: gene Location: 5223-5960 bp Feature: domain Description: truA Location: 5226-5955 bp Feature: domain Description: truA Location: 5226-5955 bp Feature: gene Location: 5986-6744 bp Feature: domain Description: YjiL Location: 5992-6739 bp Feature: domain Description: YjiL Location: 5992-6739 bp Feature: gene Location: 6979-7980 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7144-7699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 714 4 -7699 bp Feature: gene Location: 7977-8234 bp Feature: gene Location: 8257-10437 bp Feature: domain Description: PRK07726 Location: 8263-10234 bp Feature: domain Description: PRK07726 Location: 8263-10234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT truA (PRK00021), YjiL (COG1924), RVT-Retrons, PRK07726 (DNA topoisomerase 3)

Seq: USDG01000116.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_1006_length_9682_cov_7.906409, whole genome shotgun sequence (9682 bp)
Overview 1 RT 1: 400-4124 bp Neighborhood of RT #1 [400, 4225] yhbS Methyltransf_31 RVT-GII Acetyltransf_7 Feature: gene Location: 400-909 bp Feature: domain Description: yhbS Location: 403-901 bp Feature: domain Description: yhbS Location: 403-901 bp Feature: gene Location: 969-1904 bp Feature: domain Description: Methyltransf_31 Location: 1353-1677 bp Feature: domain Description: Methyltransf_31 Location: 135 3-1677 bp Feature: gene Location: 1996-3291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2251-2941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225 1-2941 bp Feature: gene Location: 3405-3554 bp Feature: gene Location: 3782-4225 bp Feature: domain Description: Acetyltransf_7 Location: 3881-4124 bp Feature: domain Description: Acetyltransf_7 Location: 3881-4124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_7 (pfam13508), yhbS (COG3153), Methyltransf_31 (pfam13847)

Seq: USDG01000121.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_1033_length_9435_cov_9.984435, whole genome shotgun sequence (9435 bp)
Overview 1 RT 1: 142-3143 bp Neighborhood of RT #1 [142, 3277] RVT-GII Ssb DUF3847 Feature: gene Location: 142-324 bp Feature: gene Location: 537-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-1482 bp Feature: gene Location: 2248-2652 bp Feature: domain Description: Ssb Location: 2251-2590 bp Feature: domain Description: Ssb Location: 2251-2590 bp Feature: gene Location: 2762-3277 bp Feature: domain Description: DUF3847 Location: 2906-3143 bp Feature: domain Description: DUF3847 Location: 2906 -3143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ssb (COG0629), DUF3847 (pfam12958), RVT-GII

Seq: USDG01000258.1 uncultured Lachnospiraceae bacterium isolate UMGS1607 genome assembly, contig: NODE_2439_length_4081_cov_4.574516, whole genome shotgun sequence (4081 bp)
Overview 1 RT 1: 56-3677 bp Neighborhood of RT #1 [56, 3677] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 56-310 bp Feature: gene Location: 575-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854-1688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854-1688 bp Feature: domain Description: Intron_maturas2 Location: 1766-2069 bp Feature: domain Description: Intron_maturas2 Location: 17 66-2069 bp Feature: gene Location: 2949-3206 bp Feature: domain Description: TraG-D_C Location: 3042-3177 bp Feature: domain Description: TraG-D_C Location: 3042-317 7 bp Feature: gene Location: 3216-3677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)