myRT

myRT report for GCA_900553945.1_UMGS1672

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Seq: USFR01000003.1 uncultured Clostridium sp. isolate UMGS1672 genome assembly, contig: NODE_54_length_164558_cov_16.572257, whole genome shotgun sequence (164558 bp)
Overview 1 RT 1: 45805-51089 bp Neighborhood of RT #1 [45805, 52249] YdhJ Peptidase_C39_2 SH3_3 SH3_3 RVT-GII GIIM Sig70_famx3 DUF4179 Feature: gene Location: 45805-46713 bp Feature: domain Description: YdhJ Location: 45973-46408 bp Feature: domain Description: YdhJ Location: 45973-46408 bp Feature: gene Location: 46807-48171 bp Feature: domain Description: Peptidase_C39_2 Location: 47146-47545 bp Feature: domain Description: Peptidase_C39_2 Location: 471 46-47545 bp Feature: domain Description: SH3_3 Location: 47749-47884 bp Feature: domain Description: SH3_3 Location: 47749-47884 bp Feature: domain Description: SH3_3 Location: 47962-48022 bp Feature: domain Description: SH3_3 Location: 47962-48022 bp Feature: gene Location: 48752-50017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48953-49571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48953-49571 bp Feature: domain Description: GIIM Note: maturase Location: 49628-49835 bp Feature: domain Description: GIIM Note: maturase Location: 49628-49835 bp Feature: gene Location: 50203-50700 bp Feature: domain Description: Sig70_famx3 Location: 50215-50683 bp Feature: domain Description: Sig70_famx3 Location: 5021 5-50683 bp Feature: gene Location: 50702-52249 bp Feature: domain Description: DUF4179 Location: 50840-51089 bp Feature: domain Description: DUF41 79 Location: 50840-51 089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdhJ (COG1078), Peptidase_C39_2 (pfam13529), SH3_3 (pfam08239), RVT-GII, GIIM (pfam08388), Sig70_famx3 (TIGR02954), DUF4179 (pfam13786)

Seq: USFR01000017.1 uncultured Clostridium sp. isolate UMGS1672 genome assembly, contig: NODE_1697_length_17684_cov_17.711385, whole genome shotgun sequence (17684 bp)
Overview 1 RT 1: 3-3720 bp Neighborhood of RT #1 [3, 3845] delta_60_rpt delta_60_rpt delta_60_rpt RVT-DGRs Avd_like MutS_I Feature: gene Location: 3-1610 bp Feature: domain Description: delta_60_rpt Location: 342-408 bp Feature: domain Description: delta_60_rpt Location: 342 -408 bp Feature: domain Description: delta_60_rpt Location: 447-555 bp Feature: domain Description: delta_60_rpt Location: 447-555 bp Feature: domain Description: delta_60_rpt Location: 594-660 bp Feature: domain Description: delta_60_rpt Location: 594-660 bp Feature: gene Location: 1788-2045 bp Feature: gene Location: 2038-3060 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2245-2920 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 45-2 92 0 bp Feature: gene Location: 3032-3406 bp Feature: domain Description: Avd_like Location: 3068-3377 bp Feature: domain Description: Avd_like Location: 3068-3377 bp Feature: gene Location: 3396-3845 bp Feature: domain Description: MutS_I Location: 3483-3720 bp Feature: domain Description: MutS_I Location: 3483-372 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), delta_60_rpt (TIGR02608), MutS_I (pfam01624)