myRT

myRT report for GCA_900554095.1_UMGS1686

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Seq: USGC01000014.1 uncultured bacterium isolate UMGS1686 genome assembly, contig: NODE_1512_length_20589_cov_5.332083, whole genome shotgun sequence (20589 bp)
Overview 1 RT 1: 95-2292 bp 2 RT 2: 11483-17046 bp Neighborhood of RT #1 [95, 2292] RVT-Retrons HTH_XRE Neighborhood of RT #2 [11483, 17046] HNH_2 YydB RVT-Retrons Trypsin_2 Feature: gene Location: 95-709 bp Feature: gene Location: 706-1695 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 859-1420 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 859-1 420 bp Feature: gene Location: 1661-1981 bp Feature: domain Description: HTH_XRE Location: 1670-1838 bp Feature: domain Description: HTH_XRE Location: 1 670-1 838 bp Feature: gene Location: 2140-2292 bp Feature: gene Location: 11483-12316 bp Feature: domain Description: HNH_2 Location: 11681-11825 bp Feature: domain Description: HNH_2 Location: 1 1 681 -1 1 825 bp Feature: gene Location: 12539-14308 bp Feature: domain Description: YydB Location: 12551-14267 bp Feature: domain Description: YydB Location: 1 2551 -1 4267 bp Feature: gene Location: 14774-16405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14897-15488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4897-1 5488 bp Feature: domain Description: Trypsin_2 Location: 15866-16328 bp Feature: domain Description: Trypsin_2 Location: 1 5866-1 6328 bp Feature: gene Location: 16448-16843 bp Feature: gene Location: 16846-17046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), HNH_2 (pfam13391), YydB (COG5293), Trypsin_2 (pfam13365)

Seq: USGC01000018.1 uncultured bacterium isolate UMGS1686 genome assembly, contig: NODE_1821_length_17627_cov_3.757114, whole genome shotgun sequence (17627 bp)
Overview 1 RT 1: 11208-15626 bp Neighborhood of RT #1 [11208, 15631] PRK09319 PRK09289 RVT-DGRs PulG DUF1566 Feature: gene Location: 11208-12419 bp Feature: domain Description: PRK09319 Location: 11220-12417 bp Feature: domain Description: PRK09319 Location: 112 2 0-12 417 bp Feature: gene Location: 12416-13009 bp Feature: domain Description: PRK09289 Location: 12419-12965 bp Feature: domain Description: PRK092 89 Location: 12 419-12 965 bp Feature: gene Location: 13169-14296 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13367-14048 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13367-14048 bp Feature: gene Location: 14416-14709 bp Feature: gene Location: 14726-15631 bp Feature: domain Description: PulG Location: 14732-15047 bp Feature: domain Description: PulG Location: 14732 -15047 bp Feature: domain Description: DUF1566 Location: 15428-15626 bp Feature: domain Description: DUF1566 Location: 1542 8-1562 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09319 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA), PRK09289 (riboflavin synthase), RVT-DGRs, PulG (pfam11773), DUF1566 (pfam07603)

Seq: USGC01000105.1 uncultured bacterium isolate UMGS1686 genome assembly, contig: NODE_5843_length_6326_cov_4.726200, whole genome shotgun sequence (6326 bp)
Overview 1 RT 1: 2002-5560 bp Neighborhood of RT #1 [2002, 5796] LbH_MAT_like RVT-Retrons Upp Feature: gene Location: 2002-2631 bp Feature: domain Description: LbH_MAT_like Location: 2281-2605 bp Feature: domain Description: LbH_MAT_like Location: 2281-2605 bp Feature: gene Location: 2712-3284 bp Feature: gene Location: 3532-4455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3643-4192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 643 -4192 bp Feature: gene Location: 4670-4981 bp Feature: gene Location: 4978-5796 bp Feature: domain Description: Upp Location: 5338-5560 bp Feature: domain Description: Upp Location: 53 3 8-5560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_MAT_like (cd04647), RVT-Retrons, Upp (COG0035)