myRT

myRT report for GCA_900554205.1_UMGS1691

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Seq: USGM01000005.1 uncultured Lachnospiraceae bacterium isolate UMGS1691 genome assembly, contig: NODE_59_length_68735_cov_3.769977, whole genome shotgun sequence (68735 bp)
Overview 1 RT 1: 40288-43892 bp Neighborhood of RT #1 [40288, 43915] PMT_2 PT_UbiA_2 RVT-UG26 cysteine_hydrolases Feature: gene Location: 40288-41904 bp Feature: domain Description: PMT_2 Location: 40624-41038 bp Feature: domain Description: PMT_2 Location: 40624-41 038 bp Feature: gene Location: 41936-42790 bp Feature: domain Description: PT_UbiA_2 Location: 41960-42764 bp Feature: domain Description: PT_UbiA_2 Location: 41 960-42764 bp Feature: gene Location: 42806-43078 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 42809-43031 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 42809-43031 bp Feature: gene Location: 43081-43368 bp Feature: gene Location: 43382-43915 bp Feature: domain Description: cysteine_hydrolases Location: 43400-43892 bp Feature: domain Description: cysteine_hydrolases Location: 43400-43892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PMT_2 (pfam13231), PT_UbiA_2 (cd13963), RVT-UG26, cysteine_hydrolases (cl00220)

Seq: USGM01000173.1 uncultured Lachnospiraceae bacterium isolate UMGS1691 genome assembly, contig: NODE_3476_length_4255_cov_3.278571, whole genome shotgun sequence (4255 bp)
Overview 1 RT 1: 3-4251 bp Neighborhood of RT #1 [3, 4253] RVT-GII RVT-GII KOG4768 HNHc T4SS-DNA_transf Feature: gene Location: 3-524 bp Feature: gene Location: 534-695 bp Feature: gene Location: 1246-2121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606-2068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606-2 068 bp Feature: gene Location: 2118-3116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2127-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 7-2 307 bp Feature: domain Description: KOG4768 Location: 2403-2598 bp Feature: domain Description: KOG4768 Location: 2 403-2 598 bp Feature: domain Description: HNHc Note: nucleases Location: 2844-2985 bp Feature: domain Description: HNHc Note: nucleases Location: 2 844-2 985 bp Feature: gene Location: 3213-4253 bp Feature: domain Description: T4SS-DNA_transf Location: 3243-4251 bp Feature: domain Description: T4SS-DNA_transf Location: 32 43-42 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: USGM01000175.1 uncultured Lachnospiraceae bacterium isolate UMGS1691 genome assembly, contig: NODE_3790_length_4017_cov_3.585563, whole genome shotgun sequence (4017 bp)
Overview 1 RT 1: 257-3291 bp Neighborhood of RT #1 [257, 3291] RVT-GII HNHc Feature: gene Location: 257-2134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584-13 22 bp Feature: domain Description: HNHc Note: nucleases Location: 1859-2021 bp Feature: domain Description: HNHc Note: nucleases Location: 1859-2021 bp Feature: gene Location: 2161-2403 bp Feature: gene Location: 2419-3291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: USGM01000192.1 uncultured Lachnospiraceae bacterium isolate UMGS1691 genome assembly, contig: NODE_5234_length_3213_cov_2.774858, whole genome shotgun sequence (3213 bp)
Overview 1 RT 1: 3-3211 bp Neighborhood of RT #1 [3, 3211] VirB4 RVT_N RVT-GII GIIM Feature: gene Location: 3-623 bp Feature: domain Description: VirB4 Location: 117-525 bp Feature: domain Description: VirB4 Location: 117-525 bp Feature: gene Location: 1150-2832 bp Feature: domain Description: RVT_N Location: 1228-1471 bp Feature: domain Description: RVT_N Location: 1228-14 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516-2179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516-2179 bp Feature: domain Description: GIIM Note: maturase Location: 2230-2467 bp Feature: domain Description: GIIM Note: maturase Location: 2230-24 67 bp Feature: gene Location: 2837-3211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: USGM01000197.1 uncultured Lachnospiraceae bacterium isolate UMGS1691 genome assembly, contig: NODE_5738_length_3021_cov_3.013149, whole genome shotgun sequence (3021 bp)
Overview 1 RT 1: 192-3018 bp Neighborhood of RT #1 [192, 3018] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 192-1988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1275 bp Feature: domain Description: Intron_maturas2 Location: 1362-1635 bp Feature: domain Description: Intron_maturas2 Location: 1362-1635 bp Feature: domain Description: HNHc Note: nucleases Location: 1815-1968 bp Feature: domain Description: HNHc Note: nucleases Location: 1815 -1968 bp Feature: gene Location: 2115-2306 bp Feature: gene Location: 2416-3018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: USGM01000209.1 uncultured Lachnospiraceae bacterium isolate UMGS1691 genome assembly, contig: NODE_7630_length_2496_cov_2.400246, whole genome shotgun sequence (2496 bp)
Overview 1 RT 1: 83-2421 bp Neighborhood of RT #1 [83, 2495] RVT-GII Intron_maturas2 SLH Feature: gene Location: 83-1873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-116 3 bp Feature: domain Description: Intron_maturas2 Location: 1247-1544 bp Feature: domain Description: Intron_maturas2 Location: 1247-1544 bp Feature: gene Location: 2143-2328 bp Feature: gene Location: 2367-2495 bp Feature: domain Description: SLH Location: 2370-2421 bp Feature: domain Description: SLH Location: 2370-2421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), SLH (pfam00395)