myRT

myRT report for GCA_900554245.1_UMGS1705

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Seq: USGX01000004.1 uncultured Clostridium sp. isolate UMGS1705 genome assembly, contig: NODE_729_length_43377_cov_4.085727, whole genome shotgun sequence (43377 bp)
Overview 1 RT 1: 1-3339 bp Neighborhood of RT #1 [1, 3339] hsdM RVT-UG2 HTH_38 Feature: gene Location: 1-747 bp Feature: domain Description: hsdM Location: 25-745 bp Feature: domain Description: hsdM Location: 25-745 bp Feature: gene Location: 871-2163 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1051-1867 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 051 -1 867 bp Feature: gene Location: 2619-3098 bp Feature: domain Description: HTH_38 Location: 2679-2805 bp Feature: domain Description: HTH_38 Location: 2679-2805 bp Feature: gene Location: 3112-3339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hsdM (TIGR00497), RVT-UG2, HTH_38 (pfam13936)

Seq: USGX01000011.1 uncultured Clostridium sp. isolate UMGS1705 genome assembly, contig: NODE_1293_length_30121_cov_4.288510, whole genome shotgun sequence (30121 bp)
Overview 1 RT 1: 689-3503 bp Neighborhood of RT #1 [689, 3538] Avd_like RVT-DGRs MutS_I arc_metj arc_metj Feature: gene Location: 689-1039 bp Feature: domain Description: Avd_like Location: 725-1025 bp Feature: domain Description: Avd_like Location: 72 5-102 5 bp Feature: gene Location: 1067-1351 bp Feature: gene Location: 1909-2406 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1993-2338 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1993-2 338 bp Feature: gene Location: 2507-2965 bp Feature: domain Description: MutS_I Location: 2525-2762 bp Feature: domain Description: MutS_I Location: 2 52 5-2 762 bp Feature: gene Location: 3179-3538 bp Feature: domain Description: arc_metj Location: 3230-3338 bp Feature: domain Description: arc_metj Location: 32 30-3338 bp Feature: domain Description: arc_metj Location: 3398-3503 bp Feature: domain Description: arc_metj Location: 3398-3503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), arc_metj (LOAD_arc_metj)

Seq: USGX01000030.1 uncultured Clostridium sp. isolate UMGS1705 genome assembly, contig: NODE_2780_length_16827_cov_3.777075, whole genome shotgun sequence (16827 bp)
Overview 1 RT 1: 12319-15214 bp Neighborhood of RT #1 [12319, 16023] Phage_XkdX RVT-DGRs DUF3751 Feature: gene Location: 12319-12465 bp Feature: domain Description: Phage_XkdX Location: 12343-12457 bp Feature: domain Description: Phage_XkdX Location: 123 43 -12457 bp Feature: gene Location: 12469-12789 bp Feature: gene Location: 12735-13895 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12963-13599 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12963 -13 599 bp Feature: gene Location: 14104-14622 bp Feature: gene Location: 14752-16023 bp Feature: domain Description: DUF3751 Location: 14770-15214 bp Feature: domain Description: DUF3 751 Location: 14770-15214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, DUF3751 (pfam12571)

Seq: USGX01000044.1 uncultured Clostridium sp. isolate UMGS1705 genome assembly, contig: NODE_4274_length_11725_cov_3.862723, whole genome shotgun sequence (11725 bp)
Overview 1 RT 1: 8534-11529 bp Neighborhood of RT #1 [8534, 11723] Bactofilin SSB RVT-DGRs Feature: gene Location: 8534-9745 bp Feature: domain Description: Bactofilin Location: 8753-9014 bp Feature: domain Description: Bactofilin Location: 8753-9014 bp Feature: gene Location: 9968-10213 bp Feature: domain Description: SSB Location: 9971-10190 bp Feature: domain Description: SSB Location: 9971-10190 bp Feature: gene Location: 10779-11723 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10923-11529 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10923-11529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bactofilin (pfam04519), SSB (pfam00436), RVT-DGRs

Seq: USGX01000086.1 uncultured Clostridium sp. isolate UMGS1705 genome assembly, contig: NODE_24936_length_2248_cov_3.727315, whole genome shotgun sequence (2248 bp)
Overview 1 RT 1: 3-1842 bp Neighborhood of RT #1 [3, 1842] RVT-Retrons Feature: gene Location: 3-650 bp Feature: gene Location: 695-1552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 857-1382 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 85 7-1382 bp Feature: gene Location: 1579-1842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: USGX01000087.1 uncultured Clostridium sp. isolate UMGS1705 genome assembly, contig: NODE_25453_length_2203_cov_5.407808, whole genome shotgun sequence (2203 bp)
Overview 1 RT 1: 86-1755 bp Neighborhood of RT #1 [86, 1937] RVT-DGRs RVT-DGRs Avd_like MutS_I Feature: gene Location: 86-445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89-245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 89-245 bp Feature: gene Location: 462-1052 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 621-972 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 21-972 bp Feature: gene Location: 1090-1488 bp Feature: domain Description: Avd_like Location: 1150-1471 bp Feature: domain Description: Avd_like Location: 1150-1471 bp Feature: gene Location: 1503-1937 bp Feature: domain Description: MutS_I Location: 1518-1755 bp Feature: domain Description: MutS_I Location: 1518-1755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), MutS_I (pfam01624)