myRT

myRT report for GCA_900554965.1_UMGS1776

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Seq: USJK01000014.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_917_length_37632_cov_7.438397, whole genome shotgun sequence (37632 bp)
Overview 1 RT 1: 18707-29182 bp Neighborhood of RT #1 [18707, 29199] GT87 PMT_2 AE_Prim_S_like RVT-UG10 GtrA Feature: gene Location: 18707-19993 bp Feature: domain Description: GT87 Location: 19172-19640 bp Feature: domain Description: GT87 Location: 1 91 72-1 9640 bp Feature: gene Location: 19990-22653 bp Feature: domain Description: PMT_2 Location: 20179-20644 bp Feature: domain Description: PMT_2 Location: 201 79-20644 bp Feature: gene Location: 23018-25531 bp Feature: domain Description: AE_Prim_S_like Location: 23174-23378 bp Feature: domain Description: AE_Prim_S_like Location: 231 74-23378 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 24374-24986 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 24374-24986 bp Feature: gene Location: 25540-28653 bp Feature: gene Location: 28696-29199 bp Feature: domain Description: GtrA Location: 28804-29182 bp Feature: domain Description: GtrA Location: 28804-291 82 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT87 (pfam09594), PMT_2 (pfam13231), AE_Prim_S_like (cl01287), RVT-UG10, GtrA (pfam04138)

Seq: USJK01000034.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_1468_length_27151_cov_12.523233, whole genome shotgun sequence (27151 bp)
Overview 1 RT 1: 12630-15818 bp Neighborhood of RT #1 [12630, 15818] RVT-Retrons Feature: gene Location: 12630-12785 bp Feature: gene Location: 13041-13379 bp Feature: gene Location: 13381-14394 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13600-14152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13600-14152 bp Feature: gene Location: 14639-14965 bp Feature: gene Location: 14946-15818 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: USJK01000172.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_5643_length_8875_cov_7.052512, whole genome shotgun sequence (8875 bp)
Overview 1 RT 1: 4541-8699 bp Neighborhood of RT #1 [4541, 8830] BaeS OmpR RVT-GII GIIM RVT-GII Feature: gene Location: 4541-5629 bp Feature: domain Description: BaeS Location: 4721-5624 bp Feature: domain Description: BaeS Location: 4721-5624 bp Feature: gene Location: 5616-6314 bp Feature: domain Description: OmpR Location: 5628-6309 bp Feature: domain Description: OmpR Location: 5628-63 09 bp Feature: gene Location: 6559-7542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6565-7159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6565-7159 bp Feature: domain Description: GIIM Note: maturase Location: 7231-7453 bp Feature: domain Description: GIIM Note: maturase Location: 723 1-7453 bp Feature: gene Location: 8105-8830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8318-8699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 18-8699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388)

Seq: USJK01000200.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_7265_length_7125_cov_6.586975, whole genome shotgun sequence (7125 bp)
Overview 1 RT 1: 3756-6501 bp Neighborhood of RT #1 [3756, 6839] DpnII RVT-Retrons Feature: gene Location: 3756-4637 bp Feature: domain Description: DpnII Location: 3771-4623 bp Feature: domain Description: DpnII Location: 3771-4 623 bp Feature: gene Location: 4709-5632 bp Feature: gene Location: 5784-6839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5943-6501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 594 3-6501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DpnII (pfam04556), RVT-Retrons

Seq: USJK01000323.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_13290_length_4088_cov_6.225380, whole genome shotgun sequence (4088 bp)
Overview 1 RT 1: 2-4000 bp Neighborhood of RT #1 [2, 4086] RVT-UG14 YodL LPD18 DUF4316 Feature: gene Location: 2-850 bp Feature: gene Location: 887-1516 bp Feature: gene Location: 1647-3194 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1998-2352 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1998-235 2 bp Feature: gene Location: 3325-4086 bp Feature: domain Description: YodL Location: 3334-3487 bp Feature: domain Description: YodL Location: 3334-3487 bp Feature: domain Description: LPD18 Location: 3508-3760 bp Feature: domain Description: LPD18 Location: 35 08-3760 bp Feature: domain Description: DUF4316 Location: 3871-4000 bp Feature: domain Description: DUF4316 Location: 3871-4000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14, YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195)

Seq: USJK01000327.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_13392_length_4059_cov_5.256906, whole genome shotgun sequence (4059 bp)
Overview 1 RT 1: 1692-3740 bp Neighborhood of RT #1 [1692, 3901] RVT-GII GIIM Feature: gene Location: 1692-2045 bp Feature: gene Location: 2313-2492 bp Feature: gene Location: 2489-3901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2840-3461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2840-346 1 bp Feature: domain Description: GIIM Note: maturase Location: 3515-3740 bp Feature: domain Description: GIIM Note: maturase Location: 3515-3740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: USJK01000358.1 uncultured Clostridiales bacterium isolate UMGS1776 genome assembly, contig: NODE_15280_length_3576_cov_6.178051, whole genome shotgun sequence (3576 bp)
Overview 1 RT 1: 170-3287 bp Neighborhood of RT #1 [170, 3304] RVT-GII GIIM YesM YesM Feature: gene Location: 170-1558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503-1196 bp Feature: domain Description: GIIM Note: maturase Location: 1259-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1259-1469 bp Feature: gene Location: 2263-2472 bp Feature: domain Description: YesM Location: 2269-2449 bp Feature: domain Description: YesM Location: 2269-2449 bp Feature: gene Location: 2486-3304 bp Feature: domain Description: YesM Location: 2792-3287 bp Feature: domain Description: YesM Location: 27 92-3287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)