myRT

myRT report for GCA_900555055.1_UMGS1782

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Seq: USJR01000011.1 uncultured Clostridium sp. isolate UMGS1782 genome assembly, contig: NODE_471_length_32851_cov_4.217557, whole genome shotgun sequence (32851 bp)
Overview 1 RT 1: 27992-31991 bp Neighborhood of RT #1 [27992, 32218] Bactofilin SSB RVT-DGRs Avd_like MutS_I Feature: gene Location: 27992-29203 bp Feature: domain Description: Bactofilin Location: 28211-28472 bp Feature: domain Description: Bactofilin Location: 2821 1 -28472 bp Feature: gene Location: 29426-29671 bp Feature: domain Description: SSB Location: 29429-29648 bp Feature: domain Description: SSB Location: 29429-29648 bp Feature: gene Location: 30255-31268 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30465-31140 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30465-31 1 40 bp Feature: gene Location: 31246-31662 bp Feature: domain Description: Avd_like Location: 31330-31639 bp Feature: domain Description: Avd_like Location: 31 330-31 639 bp Feature: gene Location: 31712-32218 bp Feature: domain Description: MutS_I Location: 31757-31991 bp Feature: domain Description: MutS_I Location: 31 757-31 991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bactofilin (pfam04519), SSB (pfam00436), RVT-DGRs, Avd_like (cd16376), MutS_I (pfam01624)

Seq: USJR01000017.1 uncultured Clostridium sp. isolate UMGS1782 genome assembly, contig: NODE_644_length_26824_cov_4.556950, whole genome shotgun sequence (26824 bp)
Overview 1 RT 1: 10865-17944 bp Neighborhood of RT #1 [10865, 17955] valS PDDEXK_2 RVT-GII PpiB Feature: gene Location: 10865-13549 bp Feature: domain Description: valS Location: 10874-13544 bp Feature: domain Description: valS Location: 10874-13544 bp Feature: gene Location: 13993-14856 bp Feature: domain Description: PDDEXK_2 Location: 14026-14689 bp Feature: domain Description: PDDEXK_2 Location: 1402 6-14689 bp Feature: gene Location: 15164-15316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15167-15299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15167-152 99 bp Feature: gene Location: 15519-17204 bp Feature: gene Location: 17230-17955 bp Feature: domain Description: PpiB Location: 17485-17944 bp Feature: domain Description: PpiB Location: 17485-17944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT valS (TIGR00422), PDDEXK_2 (pfam12784), RVT-GII, PpiB (COG0652)

Seq: USJR01000039.1 uncultured Clostridium sp. isolate UMGS1782 genome assembly, contig: NODE_1444_length_15099_cov_4.016751, whole genome shotgun sequence (15099 bp)
Overview 1 RT 1: 2443-4978 bp Neighborhood of RT #1 [2443, 4989] RVT-DGRs MutS arc_metj arc_metj Feature: gene Location: 2443-2601 bp Feature: gene Location: 2579-2983 bp Feature: gene Location: 2997-3620 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3000-3459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 000-3 459 bp Feature: gene Location: 4105-4542 bp Feature: domain Description: MutS Location: 4129-4468 bp Feature: domain Description: MutS Location: 4129-4468 bp Feature: gene Location: 4633-4989 bp Feature: domain Description: arc_metj Location: 4708-4822 bp Feature: domain Description: arc_metj Location: 4708-4822 bp Feature: domain Description: arc_metj Location: 4870-4978 bp Feature: domain Description: arc_metj Location: 4870-4978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MutS (COG0249), arc_metj (LOAD_arc_metj)

Seq: USJR01000073.1 uncultured Clostridium sp. isolate UMGS1782 genome assembly, contig: NODE_2848_length_8713_cov_3.682259, whole genome shotgun sequence (8713 bp)
Overview 1 RT 1: 7206-8713 bp Neighborhood of RT #1 [7206, 8712] MutS_I RVT-DGRs Feature: gene Location: 7206-7565 bp Feature: gene Location: 7761-8237 bp Feature: domain Description: MutS_I Location: 7800-8025 bp Feature: domain Description: MutS_I Location: 7800-8025 bp Feature: gene Location: 8212-8712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8419-8713 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84 19-8713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), RVT-DGRs