myRT

myRT report for GCA_900555135.1_UMGS1796

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Seq: USKG01000024.1 uncultured Clostridium sp. isolate UMGS1796 genome assembly, contig: NODE_2297_length_12147_cov_2.804912, whole genome shotgun sequence (12147 bp)
Overview 1 RT 1: 3-2383 bp Neighborhood of RT #1 [3, 2541] RVT-DGRs Avd_like MutS_I Feature: gene Location: 3-200 bp Feature: gene Location: 1056-1748 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1263-1731 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 263-1 731 bp Feature: gene Location: 1733-2122 bp Feature: domain Description: Avd_like Location: 1793-2111 bp Feature: domain Description: Avd_like Location: 1 793-21 1 1 bp Feature: gene Location: 2119-2541 bp Feature: domain Description: MutS_I Location: 2131-2383 bp Feature: domain Description: MutS_I Location: 21 31 -2383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), MutS_I (pfam01624)

Seq: USKG01000093.1 uncultured Clostridium sp. isolate UMGS1796 genome assembly, contig: NODE_5953_length_5408_cov_2.592004, whole genome shotgun sequence (5408 bp)
Overview 1 RT 1: 142-3575 bp Neighborhood of RT #1 [142, 3607] Peptidase_S66_mccF_like group_II_RT_mat RVT-GII COG5340 Feature: gene Location: 142-1149 bp Feature: domain Description: Peptidase_S66_mccF_like Location: 163-1096 bp Feature: domain Description: Peptidase_S66_mccF_like Location: 163-1096 bp Feature: gene Location: 1630-1932 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1735-1927 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1735-192 7 bp Feature: gene Location: 2066-2308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072-2270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 072 -2 2 70 bp Feature: gene Location: 2471-2626 bp Feature: gene Location: 3008-3607 bp Feature: domain Description: COG5340 Location: 3011-3575 bp Feature: domain Description: COG5340 Location: 3011-3575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S66_mccF_like (cd07062), group_II_RT_mat (TIGR04416), RVT-GII, COG5340 (Transcriptional regulator, predicted component of viral defense system )