myRT

myRT report for GCA_900555455.1_UMGS1833

Download annotations/find similar RTs

Seq: USLF01000007.1 uncultured Robinsoniella sp. isolate UMGS1833 genome assembly, contig: NODE_45_length_192826_cov_38.425502, whole genome shotgun sequence (192826 bp)
Overview 1 RT 1: 181121-187762 bp Neighborhood of RT #1 [181121, 187782] PRK14508 PlsC RVT-Retrons FtsX FtsX Feature: gene Location: 181121-182641 bp Feature: domain Description: PRK14508 Location: 181151-182636 bp Feature: domain Description: PRK1 4508 Location: 1 81 1 51 -1 82636 bp Feature: gene Location: 182811-183554 bp Feature: domain Description: PlsC Location: 182892-183537 bp Feature: domain Description: PlsC Location: 1 82892-1 83537 bp Feature: gene Location: 183618-184616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183783-184338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 83783-1 84338 bp Feature: gene Location: 184689-184916 bp Feature: gene Location: 185419-187782 bp Feature: domain Description: FtsX Location: 186304-186565 bp Feature: domain Description: FtsX Location: 1 86304-1 86565 bp Feature: domain Description: FtsX Location: 187477-187762 bp Feature: domain Description: FtsX Location: 1 87477-1 87762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14508 (4-alpha-glucanotransferase; Provisional), PlsC (smart00563), RVT-Retrons, FtsX (pfam02687)

Seq: USLF01000048.1 uncultured Robinsoniella sp. isolate UMGS1833 genome assembly, contig: NODE_545_length_12978_cov_30.787768, whole genome shotgun sequence (12978 bp)
Overview 1 RT 1: 5453-11138 bp Neighborhood of RT #1 [5453, 11161] UgpE RVT-GII GIIM YicI Fer4 Fer4 NADH_nitroreductase Feature: gene Location: 5453-6298 bp Feature: domain Description: UgpE Location: 5486-6293 bp Feature: domain Description: UgpE Location: 5486-62 93 bp Feature: gene Location: 6565-6708 bp Feature: gene Location: 6787-8085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7042-7732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7042 -7732 bp Feature: domain Description: GIIM Note: maturase Location: 7810-8017 bp Feature: domain Description: GIIM Note: maturase Location: 7810-8017 bp Feature: gene Location: 8226-10226 bp Feature: domain Description: YicI Location: 8394-10209 bp Feature: domain Description: YicI Location: 8394-102 09 bp Feature: gene Location: 10370-11161 bp Feature: domain Description: Fer4 Location: 10376-10445 bp Feature: domain Description: Fer4 Location: 10376-10445 bp Feature: domain Description: Fer4 Location: 10478-10526 bp Feature: domain Description: Fer4 Location: 10478-1052 6 bp Feature: domain Description: NADH_nitroreductase Location: 10613-11138 bp Feature: domain Description: NADH_nitroreductase Location: 10613-11138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fer4 (pfam00037), NADH_nitroreductase, UgpE (COG0395), RVT-GII, GIIM (pfam08388), YicI (COG1501)