myRT

myRT report for GCA_900555715.1_UMGS1855

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Seq: USMC01000001.1 uncultured Porphyromonadaceae bacterium isolate UMGS1855 genome assembly, contig: NODE_29_length_179755_cov_4.834841, whole genome shotgun sequence (179755 bp)
Overview 1 RT 1: 88205-93855 bp Neighborhood of RT #1 [88205, 94316] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 88205-88534 bp Feature: domain Description: DUF4133 Location: 88223-88487 bp Feature: domain Description: DUF41 33 Location: 88223-88487 bp Feature: gene Location: 88537-90477 bp Feature: domain Description: Bac_Flav_CT_G Location: 88540-90460 bp Feature: domain Description: Bac_Flav_CT_G Location: 88540-90460 bp Feature: gene Location: 91031-92842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91295-92114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 295-921 1 4 bp Feature: domain Description: Intron_maturas2 Location: 92186-92495 bp Feature: domain Description: Intron_maturas2 Location: 921 86-92495 bp Feature: domain Description: HNHc Note: nucleases Location: 92666-92816 bp Feature: domain Description: HNHc Note: nucleases Location: 92666-9281 6 bp Feature: gene Location: 92923-93522 bp Feature: domain Description: Bac_Flav_CT_G Location: 92953-93517 bp Feature: domain Description: Bac_Flav_CT_G Location: 92953-9351 7 bp Feature: gene Location: 93678-94316 bp Feature: domain Description: DUF4141 Location: 93702-93855 bp Feature: domain Description: DUF41 41 Location: 93702-93855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: USMC01000015.1 uncultured Porphyromonadaceae bacterium isolate UMGS1855 genome assembly, contig: NODE_534_length_55570_cov_4.105719, whole genome shotgun sequence (55570 bp)
Overview 1 RT 1: 28525-31422 bp Neighborhood of RT #1 [28525, 31422] RVT-DGRs Feature: gene Location: 28525-28839 bp Feature: gene Location: 28876-29133 bp Feature: gene Location: 29205-30491 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29415-30093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 9415-30093 bp Feature: gene Location: 30497-30982 bp Feature: gene Location: 31180-31422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: USMC01000049.1 uncultured Porphyromonadaceae bacterium isolate UMGS1855 genome assembly, contig: NODE_2507_length_19530_cov_4.734788, whole genome shotgun sequence (19530 bp)
Overview 1 RT 1: 4939-8858 bp Neighborhood of RT #1 [4939, 8858] HTH_17 GIIM RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 4939-5238 bp Feature: domain Description: HTH_17 Location: 5071-5215 bp Feature: domain Description: HTH_17 Location: 5071-5215 bp Feature: gene Location: 5343-5762 bp Feature: domain Description: GIIM Note: maturase Location: 5370-5601 bp Feature: domain Description: GIIM Note: maturase Location: 53 70-5601 bp Feature: gene Location: 5778-6740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6111-6729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6111-6729 bp Feature: gene Location: 7208-8695 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7418-7667 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7418-7667 bp Feature: domain Description: Phage_int_SAM_5 Location: 7718-8018 bp Feature: domain Description: Phage_int_SAM_5 Location: 7718-8018 bp Feature: domain Description: INTN1_C_like Location: 8075-8561 bp Feature: domain Description: INTN1_C_like Location: 8075-8561 bp Feature: gene Location: 8721-8858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), GIIM (pfam08388), RVT-GII, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)