myRT

myRT report for GCA_900555825.1_UMGS1869

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Seq: USMN01000012.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_112_length_92145_cov_7.390194, whole genome shotgun sequence (92145 bp)
Overview 1 RT 1: 59624-69793 bp Neighborhood of RT #1 [59624, 69831] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 59624-66412 bp Feature: domain Description: Laminin_G_3 Location: 62060-62441 bp Feature: domain Description: Laminin_G_3 Location: 62060-62441 bp Feature: domain Description: pfam08757 Location: 63236-63560 bp Feature: domain Description: pfam08757 Location: 63236-63560 bp Feature: domain Description: LRR_AMN1 Location: 64172-64616 bp Feature: domain Description: LRR_AMN1 Location: 641 72-6461 6 bp Feature: gene Location: 66473-66640 bp Feature: gene Location: 66785-68140 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67055-67733 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67055-67733 bp Feature: gene Location: 68142-68636 bp Feature: gene Location: 68686-69831 bp Feature: domain Description: Arm-DNA-bind_5 Location: 68710-68956 bp Feature: domain Description: Arm-DNA-bind_5 Location: 6871 0-68956 bp Feature: domain Description: Phage_int_SAM_5 Location: 68995-69280 bp Feature: domain Description: Phage_int_SAM_5 Location: 68995-69280 bp Feature: domain Description: INTN1_C_like Location: 69319-69793 bp Feature: domain Description: INTN1 _C_like Location: 6931 9-69793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: USMN01000040.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_352_length_55206_cov_7.255789, whole genome shotgun sequence (55206 bp)
Overview 1 RT 1: 36850-40115 bp Neighborhood of RT #1 [36850, 40126] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 36850-37416 bp Feature: gene Location: 37575-38036 bp Feature: gene Location: 38036-38752 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38225-38735 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 382 2 5-38735 bp Feature: gene Location: 38950-39339 bp Feature: domain Description: Avd_like Location: 38974-39280 bp Feature: domain Description: Avd_like Location: 38974-392 80 bp Feature: gene Location: 39416-40126 bp Feature: domain Description: DUF1566 Location: 39845-40115 bp Feature: domain Description: DUF1566 Location: 39845-40115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: USMN01000065.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_570_length_43052_cov_7.478243, whole genome shotgun sequence (43052 bp)
Overview 1 RT 1: 35531-42718 bp Neighborhood of RT #1 [35531, 42786] Hepar_II_III LacZ RVT-GII GIIM DUF4890 Feature: gene Location: 35531-37441 bp Feature: domain Description: Hepar_II_III Location: 36695-37076 bp Feature: domain Description: Hepar_II_III Location: 3 6695-3 7076 bp Feature: gene Location: 37451-40237 bp Feature: domain Description: LacZ Location: 37529-38795 bp Feature: domain Description: LacZ Location: 3 7529-3 8795 bp Feature: gene Location: 40344-41756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40680-41295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40680-41295 bp Feature: domain Description: GIIM Note: maturase Location: 41349-41580 bp Feature: domain Description: GIIM Note: maturase Location: 413 49-41580 bp Feature: gene Location: 42250-42786 bp Feature: domain Description: DUF4890 Location: 42352-42718 bp Feature: domain Description: DUF4890 Location: 423 52-42718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hepar_II_III (pfam07940), LacZ (COG3250), RVT-GII, GIIM (pfam08388), DUF4890 (pfam16231)

Seq: USMN01000110.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_1359_length_22972_cov_5.251865, whole genome shotgun sequence (22972 bp)
Overview 1 RT 1: 20976-22733 bp Neighborhood of RT #1 [20976, 22882] RVT-GII HTH_32 rve_3 Feature: gene Location: 20976-21338 bp Feature: gene Location: 21342-21551 bp Feature: gene Location: 21581-21778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21584-21776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21584 -21776 bp Feature: gene Location: 21899-22882 bp Feature: domain Description: HTH_32 Location: 22001-22220 bp Feature: domain Description: HTH_32 Location: 22001-22220 bp Feature: domain Description: rve_3 Location: 22538-22733 bp Feature: domain Description: rve_3 Location: 22538-22733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_32 (pfam13565), rve_3 (pfam13683)

Seq: USMN01000214.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_3817_length_9666_cov_7.488191, whole genome shotgun sequence (9666 bp)
Overview 1 RT 1: 3-5161 bp Neighborhood of RT #1 [3, 5166] Relaxase RVT-GII GIIM Esterase_713_like-3 Feature: gene Location: 3-923 bp Feature: domain Description: Relaxase Location: 27-717 bp Feature: domain Description: Relaxase Location: 27-717 bp Feature: gene Location: 928-1647 bp Feature: gene Location: 2122-3528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464-3082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2464-3082 bp Feature: domain Description: GIIM Note: maturase Location: 3139-3340 bp Feature: domain Description: GIIM Note: maturase Location: 3139-3340 bp Feature: gene Location: 3832-4077 bp Feature: gene Location: 4135-5166 bp Feature: domain Description: Esterase_713_like-3 Location: 4219-5161 bp Feature: domain Description: Esterase_713_like-3 Location: 4219-5 161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Relaxase (pfam03432)

Seq: USMN01000314.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_8065_length_4567_cov_3.541667, whole genome shotgun sequence (4567 bp)
Overview 1 RT 1: 3-3966 bp Neighborhood of RT #1 [3, 4172] major_cap_HK97 RVT-GII Intron_maturas2 major_cap_HK97 S14_ClpP_1 Feature: gene Location: 3-557 bp Feature: domain Description: major_cap_HK97 Location: 6-558 bp Feature: domain Description: major_cap_HK97 Location: 6 -558 bp Feature: gene Location: 684-2477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-176 1 bp Feature: domain Description: Intron_maturas2 Location: 1830-2130 bp Feature: domain Description: Intron_maturas2 Location: 1830-2130 bp Feature: gene Location: 3016-3423 bp Feature: domain Description: major_cap_HK97 Location: 3037-3418 bp Feature: domain Description: major_cap_HK97 Location: 3037-3418 bp Feature: gene Location: 3438-4172 bp Feature: domain Description: S14_ClpP_1 Location: 3489-3966 bp Feature: domain Description: S14_ClpP_1 Location: 3489-396 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT major_cap_HK97 (TIGR01554), S14_ClpP_1 (cd07016), RVT-GII, Intron_maturas2 (pfam01348)

Seq: USMN01000321.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_8526_length_4325_cov_3.793677, whole genome shotgun sequence (4325 bp)
Overview 1 RT 1: 839-3920 bp Neighborhood of RT #1 [839, 4123] XRE HipB COG2932 RVT_N RVT-GII GIIM Feature: gene Location: 839-1039 bp Feature: domain Description: XRE Location: 851-1034 bp Feature: domain Description: XRE Location: 851-1034 bp Feature: gene Location: 1096-1827 bp Feature: domain Description: HipB Location: 1108-1324 bp Feature: domain Description: HipB Location: 1108-1324 bp Feature: domain Description: COG2932 Location: 1480-1792 bp Feature: domain Description: COG2932 Location: 1480-17 92 bp Feature: gene Location: 2648-4123 bp Feature: RT Description: RVT_N Location: 2699-2936 bp Feature: RT Description: RVT_N Location: 2699-2936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2987-3635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2987 -3635 bp Feature: domain Description: GIIM Note: maturase Location: 3686-3920 bp Feature: domain Description: GIIM Note: maturase Location: 3686-3920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), XRE (COG1476)

Seq: USMN01000351.1 uncultured Bacteroides sp. isolate UMGS1869 genome assembly, contig: NODE_10167_length_3626_cov_7.530944, whole genome shotgun sequence (3626 bp)
Overview 1 RT 1: 168-3607 bp Neighborhood of RT #1 [168, 3624] RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 168-1976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432-1254 bp Feature: domain Description: Intron_maturas2 Location: 1377-1632 bp Feature: domain Description: Intron_maturas2 Location: 1377-1632 bp Feature: gene Location: 2527-3624 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2533-2725 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2533-2725 bp Feature: domain Description: Phage_int_SAM_5 Location: 2779-3076 bp Feature: domain Description: Phage_int_SAM_5 Location: 2779-3076 bp Feature: domain Description: INTN1_C_like Location: 3139-3607 bp Feature: domain Description: INTN1_C_like Location: 3139-3607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)