myRT

myRT report for GCA_900556035.1_UMGS1897

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Seq: USNM01000005.1 uncultured Clostridium sp. isolate UMGS1897 genome assembly, contig: NODE_46_length_78484_cov_7.281592, whole genome shotgun sequence (78484 bp)
Overview 1 RT 1: 2-3615 bp Neighborhood of RT #1 [2, 3615] Mob_Pre RVT-GII RVT-GII GIIM Mplasa_alph_rch Feature: gene Location: 2-583 bp Feature: domain Description: Mob_Pre Location: 170-560 bp Feature: domain Description: Mob_Pre Location: 1 70-560 bp Feature: gene Location: 1099-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303-1678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303-1 678 bp Feature: gene Location: 1736-2341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745-1961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 745-1 961 bp Feature: domain Description: GIIM Note: maturase Location: 2042-2252 bp Feature: domain Description: GIIM Note: maturase Location: 2042-2252 bp Feature: gene Location: 2431-3294 bp Feature: domain Description: Mplasa_alph_rch Location: 2521-3082 bp Feature: domain Description: Mplasa_alph_rch Location: 2521 -3082 bp Feature: gene Location: 3313-3615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), RVT-GII, GIIM (pfam08388), Mplasa_alph_rch (TIGR04523)

Seq: USNM01000006.1 uncultured Clostridium sp. isolate UMGS1897 genome assembly, contig: NODE_56_length_69928_cov_8.724142, whole genome shotgun sequence (69928 bp)
Overview 1 RT 1: 21051-25496 bp Neighborhood of RT #1 [21051, 25513] RVT-DGRs Avd_like YfmG Feature: gene Location: 21051-21221 bp Feature: gene Location: 21614-22849 bp Feature: gene Location: 23142-24155 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23349-24024 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 3349-2 402 4 bp Feature: gene Location: 24148-24453 bp Feature: domain Description: Avd_like Location: 24154-24430 bp Feature: domain Description: Avd_like Location: 2 4154-2 4430 bp Feature: gene Location: 24623-25513 bp Feature: domain Description: YfmG Location: 25064-25496 bp Feature: domain Description: YfmG Location: 2 5064-2 5496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: USNM01000013.1 uncultured Clostridium sp. isolate UMGS1897 genome assembly, contig: NODE_123_length_49977_cov_7.618204, whole genome shotgun sequence (49977 bp)
Overview 1 RT 1: 145-4201 bp Neighborhood of RT #1 [145, 4201] SSB_OBF RVT-DGRs MutS_I Feature: gene Location: 145-429 bp Feature: domain Description: SSB_OBF Location: 289-397 bp Feature: domain Description: SSB_OBF Location: 289-3 97 bp Feature: gene Location: 709-1008 bp Feature: gene Location: 1112-1720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1319-1676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 19-1676 bp Feature: gene Location: 2039-2521 bp Feature: domain Description: MutS_I Location: 2069-2285 bp Feature: domain Description: MutS_I Location: 2069-2285 bp Feature: gene Location: 2756-4201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT-DGRs, MutS_I (pfam01624)