myRT

myRT report for GCA_900556345.1_UMGS1925

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Seq: USOM01000006.1 uncultured Clostridium sp. isolate UMGS1925 genome assembly, contig: NODE_1591_length_14138_cov_6.623021, whole genome shotgun sequence (14138 bp)
Overview 1 RT 1: 248-3055 bp Neighborhood of RT #1 [248, 3108] RVT-GII group_II_RT_mat PDDEXK_5 Feature: gene Location: 248-529 bp Feature: gene Location: 863-1156 bp Feature: gene Location: 1232-1636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1238-1628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 238-1 628 bp Feature: gene Location: 1654-1953 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1735-1912 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 735-1 91 2 bp Feature: gene Location: 2725-3108 bp Feature: domain Description: PDDEXK_5 Location: 2743-3055 bp Feature: domain Description: PDDEXK_5 Location: 2743-3055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: USOM01000012.1 uncultured Clostridium sp. isolate UMGS1925 genome assembly, contig: NODE_2088_length_11245_cov_7.332618, whole genome shotgun sequence (11245 bp)
Overview 1 RT 1: 6346-11241 bp Neighborhood of RT #1 [6346, 11243] HTH_XRE Avd_like RVT-DGRs RVT-DGRs PRK05799 Feature: gene Location: 6346-6564 bp Feature: domain Description: HTH_XRE Location: 6355-6523 bp Feature: domain Description: HTH_XRE Location: 6355-652 3 bp Feature: gene Location: 6688-7050 bp Feature: domain Description: Avd_like Location: 6721-7039 bp Feature: domain Description: Avd_like Location: 672 1-7039 bp Feature: gene Location: 7035-7622 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7245-7608 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 72 45-7608 bp Feature: gene Location: 7705-8151 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7708-7921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7708-792 1 bp Feature: gene Location: 8885-10561 bp Feature: gene Location: 10656-11243 bp Feature: domain Description: PRK05799 Location: 10659-11241 bp Feature: domain Description: PRK05799 Location: 10659-112 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Avd_like (cd16376), RVT-DGRs, PRK05799 (oxygen-independent coproporphyrinogen III oxidase)

Seq: USOM01000023.1 uncultured Clostridium sp. isolate UMGS1925 genome assembly, contig: NODE_2713_length_8850_cov_8.154974, whole genome shotgun sequence (8850 bp)
Overview 1 RT 1: 1-6086 bp Neighborhood of RT #1 [1, 6247] AAA-ATPase_like PDDEXK_9 Glug Glug Glug Glug Glug RVT-GII GIIM Phage_int_SAM_4 Y2_Tnp Feature: gene Location: 1-897 bp Feature: domain Description: AAA-ATPase_like Location: 7-106 bp Feature: domain Description: AAA-ATPase_like Location: 7-106 bp Feature: domain Description: PDDEXK_9 Location: 580-889 bp Feature: domain Description: PDDEXK_9 Location: 580-889 bp Feature: gene Location: 1201-2841 bp Feature: domain Description: Glug Location: 1897-1957 bp Feature: domain Description: Glug Location: 1897-1957 bp Feature: domain Description: Glug Location: 1996-2056 bp Feature: domain Description: Glug Location: 1996-2056 bp Feature: domain Description: Glug Location: 2209-2278 bp Feature: domain Description: Glug Location: 2209-2278 bp Feature: domain Description: Glug Location: 2410-2476 bp Feature: domain Description: Glug Location: 2410-2476 bp Feature: domain Description: Glug Location: 2509-2572 bp Feature: domain Description: Glug Location: 2509-2572 bp Feature: gene Location: 3600-4838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3804-4461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 804-4461 bp Feature: domain Description: GIIM Note: maturase Location: 4542-4764 bp Feature: domain Description: GIIM Note: maturase Location: 4542-4764 bp Feature: gene Location: 4961-5338 bp Feature: domain Description: Phage_int_SAM_4 Location: 4979-5219 bp Feature: domain Description: Phage_int_SAM_4 Location: 4979-5219 bp Feature: gene Location: 5411-6247 bp Feature: domain Description: Y2_Tnp Location: 5546-6086 bp Feature: domain Description: Y2_Tnp Location: 5546-6086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), Y2_Tnp (pfam04986)

Seq: USOM01000042.1 uncultured Clostridium sp. isolate UMGS1925 genome assembly, contig: NODE_3332_length_7277_cov_6.678621, whole genome shotgun sequence (7277 bp)
Overview 1 RT 1: 5313-7136 bp Neighborhood of RT #1 [5313, 7276] adk RVT-DGRs Feature: gene Location: 5313-5972 bp Feature: domain Description: adk Location: 5316-5901 bp Feature: domain Description: adk Location: 5316-5901 bp Feature: gene Location: 6171-6488 bp Feature: gene Location: 6836-7276 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6839-7136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6839-7136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT adk (TIGR01351), RVT-DGRs

Seq: USOM01000076.1 uncultured Clostridium sp. isolate UMGS1925 genome assembly, contig: NODE_4340_length_5583_cov_5.704052, whole genome shotgun sequence (5583 bp)
Overview 1 RT 1: 1029-4646 bp Neighborhood of RT #1 [1029, 4672] Avd_like RVT-DGRs PulG HTH_XRE HTH_XRE Feature: gene Location: 1029-1391 bp Feature: domain Description: Avd_like Location: 1062-1380 bp Feature: domain Description: Avd_like Location: 1062-1380 bp Feature: gene Location: 1493-1651 bp Feature: gene Location: 1754-2053 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1772-2036 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1772-2036 bp Feature: gene Location: 2633-4240 bp Feature: domain Description: PulG Location: 2666-3008 bp Feature: domain Description: PulG Location: 2666-3008 bp Feature: gene Location: 4424-4672 bp Feature: domain Description: HTH_XRE Location: 4460-4523 bp Feature: domain Description: HTH_XRE Location: 4460-45 23 bp Feature: domain Description: HTH_XRE Location: 4559-4646 bp Feature: domain Description: HTH_XRE Location: 45 5 9-4646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, PulG (pfam11773), HTH_XRE (smart00530)