myRT

myRT report for GCA_900556565.1_UMGS1951

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Seq: USPL01000001.1 uncultured bacterium isolate UMGS1951 genome assembly, contig: NODE_4_length_273421_cov_11.347589, whole genome shotgun sequence (273421 bp)
Overview 1 RT 1: 46489-49934 bp Neighborhood of RT #1 [46489, 49934] RVT-Retrons HTH_17 Feature: gene Location: 46489-46842 bp Feature: gene Location: 46811-47002 bp Feature: gene Location: 47070-47981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47199-47730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 471 99-47730 bp Feature: gene Location: 48420-48668 bp Feature: domain Description: HTH_17 Location: 48468-48600 bp Feature: domain Description: HTH_1 7 Location: 48468-48600 bp Feature: gene Location: 48906-49934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_17 (pfam12728)

Seq: USPL01000003.1 uncultured bacterium isolate UMGS1951 genome assembly, contig: NODE_8_length_241577_cov_12.572076, whole genome shotgun sequence (241577 bp)
Overview 1 RT 1: 146796-154914 bp 2 RT 2: 224586-229857 bp Neighborhood of RT #1 [146796, 154916] RVT-Retrons AmmeMemoSam_rS Neighborhood of RT #2 [224586, 229857] recA RVT-DGRs PulG Feature: gene Location: 146796-150500 bp Feature: gene Location: 150576-151454 bp Feature: gene Location: 151588-152607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151753-152332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151753-152 332 bp Feature: gene Location: 152841-153860 bp Feature: gene Location: 153918-154916 bp Feature: domain Description: AmmeMemoSam_rS Location: 153924-154914 bp Feature: domain Description: AmmeMemoSam_rS Location: 15392 4-154914 bp Feature: gene Location: 224586-225608 bp Feature: domain Description: recA Location: 224628-225603 bp Feature: domain Description: recA Location: 2 2 462 8-2 2 5603 bp Feature: gene Location: 225684-226181 bp Feature: gene Location: 226980-228107 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 227172-227853 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 7172 -2 2 7853 bp Feature: gene Location: 228272-229354 bp Feature: domain Description: PulG Location: 228299-228587 bp Feature: domain Description: PulG Location: 2 2 82 99-2 2 8587 bp Feature: gene Location: 229675-229857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AmmeMemoSam_rS (TIGR04337), recA (PRK09519), RVT-DGRs, PulG (pfam11773)