myRT

myRT report for GCA_900556835.1_UMGS1971

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Seq: USQB01000224.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_5373_length_6219_cov_2.933809, whole genome shotgun sequence (6219 bp)
Overview 1 RT 1: 966-6218 bp Neighborhood of RT #1 [966, 6218] DpnII-MboI COG0610 RVT-AbiK Feature: gene Location: 966-1724 bp Feature: domain Description: DpnII-MboI Location: 1365-1716 bp Feature: domain Description: DpnII-MboI Location: 1 365-1 71 6 bp Feature: gene Location: 1731-4727 bp Feature: domain Description: COG0610 Location: 2061-4509 bp Feature: domain Description: COG061 0 Location: 2061 -4509 bp Feature: gene Location: 4739-5704 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 5162-5594 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 51 62-5594 bp Feature: gene Location: 5706-6218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DpnII-MboI (pfam18742), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-AbiK

Seq: USQB01000307.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_6518_length_4890_cov_2.576422, whole genome shotgun sequence (4890 bp)
Overview 1 RT 1: 3849-4611 bp Neighborhood of RT #1 [3849, 4889] Phage_holin_5_2 RVT-UG18 Feature: gene Location: 3849-4142 bp Feature: domain Description: Phage_holin_5_2 Location: 3894-4125 bp Feature: domain Description: Phage_holin_5_2 Location: 3894-412 5 bp Feature: gene Location: 4155-4478 bp Feature: gene Location: 4497-4889 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 4512-4611 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 4512 -4611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-UG18

Seq: USQB01000352.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_7117_length_4355_cov_3.371163, whole genome shotgun sequence (4355 bp)
Overview 1 RT 1: 736-4287 bp Neighborhood of RT #1 [736, 4292] Eco57I RVT-GII GIIM RVT-GII Feature: gene Location: 736-1797 bp Feature: domain Description: Eco57I Location: 739-1024 bp Feature: domain Description: Eco57I Location: 73 9-1024 bp Feature: gene Location: 1799-2737 bp Feature: gene Location: 2930-3859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2936-3368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 6-3 3 68 bp Feature: domain Description: GIIM Note: maturase Location: 3425-3644 bp Feature: domain Description: GIIM Note: maturase Location: 3 425-3 644 bp Feature: gene Location: 3873-4292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4119-4287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4119-4287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Eco57I (pfam07669), RVT-GII, GIIM (pfam08388)

Seq: USQB01000388.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_7548_length_4038_cov_4.012553, whole genome shotgun sequence (4038 bp)
Overview 1 RT 1: 2-3525 bp Neighborhood of RT #1 [2, 4037] COG4646 RVT-GII HELICc Feature: gene Location: 2-430 bp Feature: domain Description: COG4646 Location: 8-293 bp Feature: domain Description: COG4 64 6 Location: 8-293 bp Feature: gene Location: 598-768 bp Feature: gene Location: 1082-3112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517-2243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517-224 3 bp Feature: gene Location: 3222-4037 bp Feature: domain Description: HELICc Location: 3261-3525 bp Feature: domain Description: HELICc Location: 3261-3525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HELICc (smart00490)

Seq: USQB01000391.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_7562_length_4028_cov_3.590989, whole genome shotgun sequence (4028 bp)
Overview 1 RT 1: 77-3925 bp Neighborhood of RT #1 [77, 4026] RVT-GII GIIM SunT rSAM_vs_C_rich Feature: gene Location: 77-859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83-428 bp Feature: domain Description: GIIM Note: maturase Location: 488-722 bp Feature: domain Description: GIIM Note: maturase Location: 488-722 bp Feature: gene Location: 1425-3026 bp Feature: domain Description: SunT Location: 1458-2979 bp Feature: domain Description: SunT Location: 145 8-2979 bp Feature: gene Location: 3079-4026 bp Feature: domain Description: rSAM_vs_C_rich Location: 3082-3925 bp Feature: domain Description: rSAM_vs_C_rich Location: 3082-3925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SunT (COG2274), rSAM_vs_C_rich (TIGR04463)

Seq: USQB01000510.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_9101_length_3172_cov_3.385306, whole genome shotgun sequence (3172 bp)
Overview 1 RT 1: 805-2904 bp Neighborhood of RT #1 [805, 3065] HTH_ARSR RVT-GII GIIM Feature: gene Location: 805-1113 bp Feature: domain Description: HTH_ARSR Location: 835-1060 bp Feature: domain Description: HTH_ARSR Location: 835-106 0 bp Feature: gene Location: 1286-1444 bp Feature: gene Location: 1647-3065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-2616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-26 16 bp Feature: domain Description: GIIM Note: maturase Location: 2676-2904 bp Feature: domain Description: GIIM Note: maturase Location: 26 76 -2904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII, GIIM (pfam08388)

Seq: USQB01000632.1 uncultured Lachnospiraceae bacterium isolate UMGS1971 genome assembly, contig: NODE_11166_length_2475_cov_3.807025, whole genome shotgun sequence (2475 bp)
Overview 1 RT 1: 1-2404 bp Neighborhood of RT #1 [1, 2472] YesM RVT-GII GIIM Feature: gene Location: 1-1314 bp Feature: domain Description: YesM Location: 841-1312 bp Feature: domain Description: YesM Location: 841-1312 bp Feature: gene Location: 1438-1767 bp Feature: gene Location: 1867-2472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870-2107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187 0-2107 bp Feature: domain Description: GIIM Note: maturase Location: 2188-2404 bp Feature: domain Description: GIIM Note: maturase Location: 2188-2404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)