myRT

myRT report for GCA_900557085.1_UMGS2007

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Seq: USRJ01000016.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_131_length_13804_cov_2.439523, whole genome shotgun sequence (13804 bp)
Overview 1 RT 1: 10056-13491 bp Neighborhood of RT #1 [10056, 13802] COG4372 COG4372 AE_Prim_S_like RVT-UG10 Feature: gene Location: 10056-10958 bp Feature: domain Description: COG4372 Location: 10089-10560 bp Feature: domain Description: COG4372 Location: 1 0089-1 0560 bp Feature: domain Description: COG4372 Location: 10668-10914 bp Feature: domain Description: COG4372 Location: 1 0668-1 091 4 bp Feature: gene Location: 10980-11330 bp Feature: gene Location: 11490-13802 bp Feature: domain Description: AE_Prim_S_like Location: 11658-11889 bp Feature: domain Description: AE_Prim_S_like Location: 1 1 658-1 1 889 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 12879-13491 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 1 2879-1 3491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4372 (Uncharacterized conserved protein, contains DUF3084 domain ), AE_Prim_S_like (cl01287), RVT-UG10

Seq: USRJ01000230.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_942_length_5453_cov_1.856799, whole genome shotgun sequence (5453 bp)
Overview 1 RT 1: 2924-5450 bp Neighborhood of RT #1 [2924, 5450] RVT-DGRs Feature: gene Location: 2924-3235 bp Feature: gene Location: 3399-3878 bp Feature: gene Location: 3880-5166 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4072-4669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4072 -4669 bp Feature: gene Location: 5196-5450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: USRJ01000246.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_1005_length_5267_cov_1.610514, whole genome shotgun sequence (5267 bp)
Overview 1 RT 1: 1882-5261 bp Neighborhood of RT #1 [1882, 5266] MutS_I Avd_like RVT-DGRs SSB PDDEXK_2 Feature: gene Location: 1882-2388 bp Feature: domain Description: MutS_I Location: 1927-2161 bp Feature: domain Description: MutS_I Location: 1927-2161 bp Feature: gene Location: 2438-2854 bp Feature: domain Description: Avd_like Location: 2522-2831 bp Feature: domain Description: Avd_like Location: 2522-283 1 bp Feature: gene Location: 2832-3845 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3045-3651 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 045-3 651 bp Feature: gene Location: 4411-4668 bp Feature: domain Description: SSB Location: 4414-4630 bp Feature: domain Description: SSB Location: 4414-463 0 bp Feature: gene Location: 4928-5266 bp Feature: domain Description: PDDEXK_2 Location: 4961-5261 bp Feature: domain Description: PDDEXK_2 Location: 4961-5261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), Avd_like (cd16376), RVT-DGRs, SSB (pfam00436), PDDEXK_2 (pfam12784)

Seq: USRJ01000420.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_1674_length_3877_cov_2.407902, whole genome shotgun sequence (3877 bp)
Overview 1 RT 1: 666-3673 bp Neighborhood of RT #1 [666, 3673] RVT-UG2 Feature: gene Location: 666-929 bp Feature: gene Location: 950-1216 bp Feature: gene Location: 1231-2724 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1546-2398 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 154 6-2398 bp Feature: gene Location: 2977-3537 bp Feature: gene Location: 3539-3673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: USRJ01000452.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_1776_length_3725_cov_2.237330, whole genome shotgun sequence (3725 bp)
Overview 1 RT 1: 175-2732 bp Neighborhood of RT #1 [175, 2752] RVT-GII PHA02517 InsE Feature: gene Location: 175-1470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-1120 bp Feature: gene Location: 1557-2471 bp Feature: domain Description: PHA02517 Location: 1653-2451 bp Feature: domain Description: PHA025 17 Location: 165 3-245 1 bp Feature: gene Location: 2468-2752 bp Feature: domain Description: InsE Location: 2477-2732 bp Feature: domain Description: InsE Location: 2477-2732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: USRJ01000570.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_2214_length_3210_cov_1.983518, whole genome shotgun sequence (3210 bp)
Overview 1 RT 1: 3-3209 bp Neighborhood of RT #1 [3, 3208] NGN_SP_UpxY rfaH RVT-AbiP2 GLF Feature: gene Location: 3-569 bp Feature: domain Description: NGN_SP_UpxY Location: 12-345 bp Feature: domain Description: NGN_SP_UpxY Location: 12-345 bp Feature: domain Description: rfaH Location: 390-492 bp Feature: domain Description: rfaH Location: 390-492 bp Feature: gene Location: 579-2252 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1023-1482 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1023-1482 bp Feature: gene Location: 2318-3208 bp Feature: domain Description: GLF Location: 2807-3209 bp Feature: domain Description: GLF Location: 2807-3209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), rfaH (PRK09014), RVT-AbiP2, GLF (pfam03275)

Seq: USRJ01000593.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_2279_length_3144_cov_2.182583, whole genome shotgun sequence (3144 bp)
Overview 1 RT 1: 1-2824 bp Neighborhood of RT #1 [1, 2824] MPP_YkuE_C RVT-GII GIIM Feature: gene Location: 1-630 bp Feature: domain Description: MPP_YkuE_C Location: 7-619 bp Feature: domain Description: MPP_YkuE_C Location: 7 -619 bp Feature: gene Location: 737-883 bp Feature: gene Location: 1248-2537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-2172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539-217 2 bp Feature: domain Description: GIIM Note: maturase Location: 2253-2478 bp Feature: domain Description: GIIM Note: maturase Location: 2253-247 8 bp Feature: gene Location: 2678-2824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_YkuE_C (cd07385), RVT-GII, GIIM (pfam08388)

Seq: USRJ01000682.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_2693_length_2774_cov_2.199706, whole genome shotgun sequence (2774 bp)
Overview 1 RT 1: 2-2380 bp Neighborhood of RT #1 [2, 2721] INTN1_C_like RVT-GII Intron_maturas2 Feature: gene Location: 2-364 bp Feature: domain Description: INTN1_C_like Location: 32-347 bp Feature: domain Description: INTN1_C_like Location: 32-347 bp Feature: gene Location: 913-2721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1177-1999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1177-1999 bp Feature: domain Description: Intron_maturas2 Location: 2110-2380 bp Feature: domain Description: Intron_maturas2 Location: 2110-238 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348)

Seq: USRJ01000754.1 uncultured Bacteroides sp. isolate UMGS2007 genome assembly, contig: NODE_3003_length_2573_cov_1.547657, whole genome shotgun sequence (2573 bp)
Overview 1 RT 1: 137-2406 bp Neighborhood of RT #1 [137, 2406] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 137-1960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401-1223 bp Feature: domain Description: Intron_maturas2 Location: 1388-1640 bp Feature: domain Description: Intron_maturas2 Location: 1388-1640 bp Feature: domain Description: HNHc Note: nucleases Location: 1751-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1751-19 22 bp Feature: gene Location: 2218-2406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)