myRT

myRT report for GCA_900566055.1_LAUMK13

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Seq: UPHQ01000341.1 Mycobacterium sp. MK13 genome assembly, contig: LAUMK13_341, whole genome shotgun sequence (1873 bp)
Overview 1 RT 1: 3-1873 bp Neighborhood of RT #1 [3, 1872] RVT_N RVT-GII Feature: gene Location: 3-740 bp Feature: gene Location: 1372-1872 bp Feature: RT Description: RVT_N Location: 1429-1666 bp Feature: RT Description: RVT_N Location: 1 429-1 666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1726-1873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 726-1 873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: UPHQ01000326.1 Mycobacterium sp. MK13 genome assembly, contig: LAUMK13_326, whole genome shotgun sequence (3110 bp)
Overview 1 RT 1: 114-2901 bp Neighborhood of RT #1 [114, 2901] RVT_N RVT-GII DDE_Tnp_1_assoc DDE_Tnp_1 Feature: gene Location: 114-1040 bp Feature: RT Description: RVT_N Location: 222-468 bp Feature: RT Description: RVT_N Location: 2 2 2 -468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 519-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 519-102 6 bp Feature: gene Location: 1642-2676 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 1747-2011 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 1747-2 011 bp Feature: domain Description: DDE_Tnp_1 Location: 2038-2611 bp Feature: domain Description: DDE_Tnp_1 Location: 2 038-2 611 bp Feature: gene Location: 2740-2901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609)

Seq: UPHQ01000357.1 Mycobacterium sp. MK13 genome assembly, contig: LAUMK13_357, whole genome shotgun sequence (1214 bp)
Overview 1 RT 1: 1-931 bp Neighborhood of RT #1 [1, 1212] RVT-GII GIIM Feature: gene Location: 1-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-646 bp Feature: domain Description: GIIM Note: maturase Location: 697-931 bp Feature: domain Description: GIIM Note: maturase Location: 697-93 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UPHQ01000307.1 Mycobacterium sp. MK13 genome assembly, contig: LAUMK13_307, whole genome shotgun sequence (4587 bp)
Overview 1 RT 1: 3-4225 bp Neighborhood of RT #1 [3, 4413] HTH_33 RVT_N RVT-GII GIIM Transposase_mut Feature: gene Location: 3-290 bp Feature: domain Description: HTH_33 Location: 27-201 bp Feature: domain Description: HTH_33 Location: 27-201 bp Feature: gene Location: 599-2587 bp Feature: RT Description: RVT_N Location: 836-1073 bp Feature: RT Description: RVT_N Location: 836-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1133-1796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1133-1796 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2096 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2096 bp Feature: gene Location: 3103-4413 bp Feature: domain Description: Transposase_mut Location: 3181-4225 bp Feature: domain Description: Transposase_mut Location: 3181-4 225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), HTH_33 (pfam13592), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: UPHQ01000013.1 Mycobacterium sp. MK13 genome assembly, contig: LAUMK13_13, whole genome shotgun sequence (9671 bp)
Overview 1 RT 1: 3645-9472 bp Neighborhood of RT #1 [3645, 9472] PAP2_like_4 LCB5 STKc_PknB_like RVT_N RVT-GII Feature: gene Location: 3645-5141 bp Feature: domain Description: PAP2_like_4 Location: 3705-4197 bp Feature: domain Description: PAP2_like_4 Location: 3705 -4197 bp Feature: domain Description: LCB5 Location: 4287-5127 bp Feature: domain Description: LCB5 Location: 4287-5 127 bp Feature: gene Location: 5178-7073 bp Feature: domain Description: STKc_PknB_like Location: 5211-6003 bp Feature: domain Description: STKc_PknB_like Location: 5 211-6003 bp Feature: gene Location: 7513-8334 bp Feature: RT Description: RVT_N Location: 7603-7840 bp Feature: RT Description: RVT_N Location: 7603-7840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7900-8245 bp Feature: gene Location: 8963-9472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_like_4 (cd03395), LCB5 (COG1597), STKc_PknB_like (cd14014), RVT_N (pfam13655), RVT-GII

Seq: UPHQ01000150.1 Mycobacterium sp. MK13 genome assembly, contig: LAUMK13_150, whole genome shotgun sequence (1943 bp)
Overview 1 RT 1: 594-1782 bp Neighborhood of RT #1 [594, 1856] RVT-GII GIIM Feature: gene Location: 594-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-1470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-1470 bp Feature: domain Description: GIIM Note: maturase Location: 1554-1782 bp Feature: domain Description: GIIM Note: maturase Location: 1554-1782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)