myRT

myRT report for GCA_900576745.1_SB3301.fasta

Download annotations/find similar RTs

Seq: USZZ01000014.1 Klebsiella variicola isolate SB3301 genome assembly, contig: K53_scaffold14, whole genome shotgun sequence (32439 bp)
Overview 1 RT 1: 25796-30017 bp Neighborhood of RT #1 [25796, 30028] DUF4238 PRK09951 RVT_N RVT-GII GIIM PRK09951 Feature: gene Location: 25796-26857 bp Feature: domain Description: DUF4238 Location: 25892-26777 bp Feature: domain Description: DUF4238 Location: 25892-26777 bp Feature: gene Location: 27188-27619 bp Feature: domain Description: PRK09951 Location: 27269-27614 bp Feature: domain Description: PRK09951 Location: 27269-2761 4 bp Feature: gene Location: 27626-29119 bp Feature: domain Description: RVT_N Location: 27671-27914 bp Feature: domain Description: RVT_N Location: 27671 -2791 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27959-28607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27959-28607 bp Feature: domain Description: GIIM Note: maturase Location: 28667-28895 bp Feature: domain Description: GIIM Note: maturase Location: 28667-28895 bp Feature: gene Location: 29402-29635 bp Feature: gene Location: 29690-30028 bp Feature: domain Description: PRK09951 Location: 29693-30017 bp Feature: domain Description: PRK09951 Location: 29693-3001 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4238 (pfam14022), PRK09951 (hypothetical protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: USZZ01000198.1 Klebsiella variicola isolate SB3301 genome assembly, contig: K53_C4025, whole genome shotgun sequence (10546 bp)
Overview 1 RT 1: 3190-6259 bp Neighborhood of RT #1 [3190, 6259] RVT-UG2 PinE Feature: gene Location: 3190-3378 bp Feature: gene Location: 3650-3829 bp Feature: gene Location: 3909-5246 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4161-4953 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4161-4953 bp Feature: gene Location: 5345-5977 bp Feature: domain Description: PinE Location: 5408-5963 bp Feature: domain Description: PinE Location: 5408-5963 bp Feature: gene Location: 6116-6259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PinE (COG1961)