myRT

myRT report for GCA_900580635.1_p11.D9

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Seq: UTBC01000061.1 Pseudomonas sp. 286 isolate p11.D9 genome assembly, contig: 61, whole genome shotgun sequence (311873 bp)
Overview 1 RT 1: 182878-189474 bp 2 RT 2: 207891-211673 bp Neighborhood of RT #1 [182878, 190052] DUF4297 DUF1837 RVT-Retrons HEPN_MAE_28990 Neighborhood of RT #2 [207891, 211673] xerC RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 182878-184494 bp Feature: domain Description: DUF4297 Location: 182905-183505 bp Feature: domain Description: DUF4297 Location: 1 82905-1 83505 bp Feature: domain Description: DUF1837 Location: 183760-184438 bp Feature: domain Description: DUF1 837 Location: 1 83760-1 84438 bp Feature: gene Location: 184985-186220 bp Feature: gene Location: 186407-187582 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186683-187310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 86683-1 8731 0 bp Feature: gene Location: 187609-188802 bp Feature: gene Location: 189081-190052 bp Feature: domain Description: HEPN_MAE_28990 Location: 189225-189474 bp Feature: domain Description: HEPN_MAE_28990 Location: 1 89225-1 89474 bp Feature: gene Location: 207891-208697 bp Feature: domain Description: xerC Location: 208047-208683 bp Feature: domain Description: xerC Location: 208047-208683 bp Feature: gene Location: 209290-209484 bp Feature: gene Location: 209519-210808 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 209765-210350 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 209765-21 0350 bp Feature: gene Location: 210913-211095 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 210943-211048 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 21 0943-21 1 048 bp Feature: gene Location: 211212-211673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), DUF1837 (pfam08878), RVT-Retrons, HEPN_MAE_28990 (pfam18737), xerC (PRK01287), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)

Seq: UTBC01000027.1 Pseudomonas sp. 286 isolate p11.D9 genome assembly, contig: 27, whole genome shotgun sequence (126735 bp)
Overview 1 RT 1: 3995-12954 bp Neighborhood of RT #1 [3995, 13112] ParE COG3905 RVT-UG5 BRR2 BRR2 Integrase_1 Feature: gene Location: 3995-4285 bp Feature: domain Description: ParE Location: 3998-4268 bp Feature: domain Description: ParE Location: 3998-42 68 bp Feature: gene Location: 4248-4511 bp Feature: domain Description: COG3905 Location: 4263-4470 bp Feature: domain Description: COG3905 Location: 42 63-4470 bp Feature: gene Location: 5178-8414 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5706-6189 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5706-6189 bp Feature: gene Location: 8630-10747 bp Feature: domain Description: BRR2 Location: 8882-9266 bp Feature: domain Description: BRR2 Location: 8882 -92 66 bp Feature: domain Description: BRR2 Location: 9536-10106 bp Feature: domain Description: BRR2 Location: 9536-10106 bp Feature: gene Location: 12132-13112 bp Feature: domain Description: Integrase_1 Location: 12519-12954 bp Feature: domain Description: Integrase_1 Location: 12 519-12 954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), COG3905 (Predicted transcriptional regulator ), RVT-UG5, BRR2 (COG1204), Integrase_1 (pfam12835)