myRT

myRT report for GCA_900581335.1_p12.C8

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Seq: UTDS01000077.1 Pseudomonas sp. 286 isolate p12.C8 genome assembly, contig: 77, whole genome shotgun sequence (556657 bp)
Overview 1 RT 1: 543495-552595 bp Neighborhood of RT #1 [543495, 552612] Integrase_1 BRR2 BRR2 RVT-UG5 COG3905 ParE Feature: gene Location: 543495-544475 bp Feature: domain Description: Integrase_1 Location: 543882-544317 bp Feature: domain Description: Integrase_1 Location: 543882-54431 7 bp Feature: gene Location: 545860-547977 bp Feature: domain Description: BRR2 Location: 546112-546496 bp Feature: domain Description: BRR2 Location: 5461 1 2-546496 bp Feature: domain Description: BRR2 Location: 546766-547336 bp Feature: domain Description: BRR2 Location: 546766-547336 bp Feature: gene Location: 548193-551429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 548721-549204 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 548721 -549204 bp Feature: gene Location: 552096-552359 bp Feature: domain Description: COG3905 Location: 552111-552318 bp Feature: domain Description: COG3905 Location: 5521 1 1 -55231 8 bp Feature: gene Location: 552322-552612 bp Feature: domain Description: ParE Location: 552325-552595 bp Feature: domain Description: ParE Location: 552325-552595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), BRR2 (COG1204), RVT-UG5, COG3905 (Predicted transcriptional regulator ), ParE (COG3668)

Seq: UTDS01000005.1 Pseudomonas sp. 286 isolate p12.C8 genome assembly, contig: 5, whole genome shotgun sequence (376595 bp)
Overview 1 RT 1: 252838-259084 bp 2 RT 2: 277851-281633 bp Neighborhood of RT #1 [252838, 259084] DUF4297 DUF1837 RVT-Retrons Neighborhood of RT #2 [277851, 281633] xerC RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 252838-254454 bp Feature: domain Description: DUF4297 Location: 252865-253465 bp Feature: domain Description: DUF42 97 Location: 2 52 865-2 53465 bp Feature: domain Description: DUF1837 Location: 253720-254398 bp Feature: domain Description: DUF1837 Location: 2 5372 0-2 54398 bp Feature: gene Location: 254945-256180 bp Feature: gene Location: 256367-257542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 256643-257270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 56643-2 572 70 bp Feature: gene Location: 257569-258762 bp Feature: gene Location: 258812-259084 bp Feature: gene Location: 277851-278657 bp Feature: domain Description: xerC Location: 278007-278643 bp Feature: domain Description: xerC Location: 2 78007-2 78643 bp Feature: gene Location: 279250-279444 bp Feature: gene Location: 279479-280768 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 279725-280310 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 2 7972 5-2 80310 bp Feature: gene Location: 280873-281055 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 280903-281008 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 2 80903-2 81008 bp Feature: gene Location: 281172-281633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), DUF1837 (pfam08878), RVT-Retrons, xerC (PRK01287), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)