myRT

myRT report for GCA_900581775.1_p12.H6

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Seq: UTFM01000034.1 Pseudomonas sp. 286 isolate p12.H6 genome assembly, contig: 34, whole genome shotgun sequence (596294 bp)
Overview 1 RT 1: 182906-189152 bp 2 RT 2: 207919-211701 bp Neighborhood of RT #1 [182906, 189152] DUF4297 DUF1837 RVT-Retrons Neighborhood of RT #2 [207919, 211701] xerC RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 182906-184522 bp Feature: domain Description: DUF4297 Location: 182933-183533 bp Feature: domain Description: DUF4297 Location: 1 82933-1 83533 bp Feature: domain Description: DUF1837 Location: 183788-184466 bp Feature: domain Description: DUF1 837 Location: 1 83788-1 84466 bp Feature: gene Location: 185013-186248 bp Feature: gene Location: 186435-187610 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186711-187338 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8671 1 -1 87338 bp Feature: gene Location: 187637-188830 bp Feature: gene Location: 188880-189152 bp Feature: gene Location: 207919-208725 bp Feature: domain Description: xerC Location: 208075-208711 bp Feature: domain Description: xerC Location: 208075-20871 1 bp Feature: gene Location: 209318-209512 bp Feature: gene Location: 209547-210836 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 209793-210378 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 209793-21 0378 bp Feature: gene Location: 210941-211123 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 210971-211076 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 21 0971 -21 1 076 bp Feature: gene Location: 211240-211701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), DUF1837 (pfam08878), RVT-Retrons, xerC (PRK01287), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)

Seq: UTFM01000024.1 Pseudomonas sp. 286 isolate p12.H6 genome assembly, contig: 24, whole genome shotgun sequence (161779 bp)
Overview 1 RT 1: 92644-100221 bp Neighborhood of RT #1 [92644, 100331] ParE COG3905 RVT-UG5 BRR2 BRR2 DUF1837 Feature: gene Location: 92644-92934 bp Feature: domain Description: ParE Location: 92647-92917 bp Feature: domain Description: ParE Location: 92 647-92 917 bp Feature: gene Location: 92897-93160 bp Feature: domain Description: COG3905 Location: 92912-93119 bp Feature: domain Description: COG3905 Location: 92 912 -93119 bp Feature: gene Location: 93827-97063 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94355-94838 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94355-94838 bp Feature: gene Location: 97279-99396 bp Feature: domain Description: BRR2 Location: 97531-97915 bp Feature: domain Description: BRR2 Location: 97531-97915 bp Feature: domain Description: BRR2 Location: 98185-98755 bp Feature: domain Description: BRR2 Location: 98185-98755 bp Feature: gene Location: 99366-100331 bp Feature: domain Description: DUF1837 Location: 99498-100221 bp Feature: domain Description: DUF1837 Location: 99498-1002 2 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), COG3905 (Predicted transcriptional regulator ), RVT-UG5, BRR2 (COG1204), DUF1837 (pfam08878)