myRT

myRT report for GCA_900583245.1_p1.F5

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Seq: UTLA01000016.1 (95332 bp)
Overview 1 RT 1: 26197-35156 bp Neighborhood of RT #1 [26197, 35314] ParE COG3905 RVT-UG5 BRR2 BRR2 Integrase_1 Feature: gene Location: 26197-26487 bp Feature: domain Description: ParE Location: 26200-26470 bp Feature: domain Description: ParE Location: 26200-26470 bp Feature: gene Location: 26450-26713 bp Feature: domain Description: COG3905 Location: 26465-26672 bp Feature: domain Description: COG3905 Location: 26465-26672 bp Feature: gene Location: 27380-30616 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 27908-28391 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 27908-28391 bp Feature: gene Location: 30832-32949 bp Feature: domain Description: BRR2 Location: 31084-31468 bp Feature: domain Description: BRR2 Location: 31 084-31 468 bp Feature: domain Description: BRR2 Location: 31738-32308 bp Feature: domain Description: BRR2 Location: 31 738-32308 bp Feature: gene Location: 34334-35314 bp Feature: domain Description: Integrase_1 Location: 34721-35156 bp Feature: domain Description: Integrase_1 Location: 34721 -351 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), COG3905 (Predicted transcriptional regulator ), RVT-UG5, BRR2 (COG1204), Integrase_1 (pfam12835)

Seq: UTLA01000056.1 (446779 bp)
Overview 1 RT 1: 179613-185859 bp 2 RT 2: 204626-208408 bp Neighborhood of RT #1 [179613, 185859] DUF4297 DUF1837 RVT-Retrons Neighborhood of RT #2 [204626, 208408] xerC RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 179613-181229 bp Feature: domain Description: DUF4297 Location: 179640-180240 bp Feature: domain Description: DUF42 97 Location: 179640-1802 40 bp Feature: domain Description: DUF1837 Location: 180495-181173 bp Feature: domain Description: DUF1837 Location: 180495-181173 bp Feature: gene Location: 181720-182955 bp Feature: gene Location: 183142-184317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183418-184045 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183418-184045 bp Feature: gene Location: 184344-185537 bp Feature: gene Location: 185587-185859 bp Feature: gene Location: 204626-205432 bp Feature: domain Description: xerC Location: 204782-205418 bp Feature: domain Description: xerC Location: 2 04782 -2 05418 bp Feature: gene Location: 206025-206219 bp Feature: gene Location: 206254-207543 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 206500-207085 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 2 06500-2 07085 bp Feature: gene Location: 207648-207830 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 207678-207783 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 2 07678-2 07783 bp Feature: gene Location: 207947-208408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), DUF1837 (pfam08878), RVT-Retrons, xerC (PRK01287), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)