myRT

myRT report for GCA_900584585.1_p21.C3

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Seq: UTQG01000030.1 (381843 bp)
Overview 1 RT 1: 252785-259031 bp 2 RT 2: 277798-281580 bp Neighborhood of RT #1 [252785, 259031] DUF4297 DUF1837 RVT-Retrons Neighborhood of RT #2 [277798, 281580] xerC RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 252785-254401 bp Feature: domain Description: DUF4297 Location: 252812-253412 bp Feature: domain Description: DUF4297 Location: 25281 2-25341 2 bp Feature: domain Description: DUF1837 Location: 253667-254345 bp Feature: domain Description: DUF1 837 Location: 253667-254345 bp Feature: gene Location: 254892-256127 bp Feature: gene Location: 256314-257489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 256590-257217 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 256590-25721 7 bp Feature: gene Location: 257516-258709 bp Feature: gene Location: 258759-259031 bp Feature: gene Location: 277798-278604 bp Feature: domain Description: xerC Location: 277954-278590 bp Feature: domain Description: xerC Location: 277954-278590 bp Feature: gene Location: 279197-279391 bp Feature: gene Location: 279426-280715 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 279672-280257 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 279672-280257 bp Feature: gene Location: 280820-281002 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 280850-280955 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 280850-280955 bp Feature: gene Location: 281119-281580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), DUF1837 (pfam08878), RVT-Retrons, xerC (PRK01287), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)

Seq: UTQG01000041.1 (215384 bp)
Overview 1 RT 1: 113624-122724 bp Neighborhood of RT #1 [113624, 122741] Integrase_1 BRR2 BRR2 RVT-UG5 COG3905 ParE Feature: gene Location: 113624-114604 bp Feature: domain Description: Integrase_1 Location: 114011-114446 bp Feature: domain Description: Integrase_1 Location: 114011-114446 bp Feature: gene Location: 115989-118106 bp Feature: domain Description: BRR2 Location: 116241-116625 bp Feature: domain Description: BRR2 Location: 1162 41-11662 5 bp Feature: domain Description: BRR2 Location: 116895-117465 bp Feature: domain Description: BRR2 Location: 116895-117465 bp Feature: gene Location: 118322-121558 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 118850-119333 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 118850-119333 bp Feature: gene Location: 122225-122488 bp Feature: domain Description: COG3905 Location: 122240-122447 bp Feature: domain Description: COG3905 Location: 12 2 2 40-12 2 447 bp Feature: gene Location: 122451-122741 bp Feature: domain Description: ParE Location: 122454-122724 bp Feature: domain Description: ParE Location: 12 2 454-12 2 72 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), BRR2 (COG1204), RVT-UG5, COG3905 (Predicted transcriptional regulator ), ParE (COG3668)