myRT

myRT report for GCA_900589505.1_p2.E7

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Seq: UUJG01000052.1 (637 bp)
Overview 1 RT 1: 79-337 bp Neighborhood of RT #1 [79, 636] RVT-UG11 Feature: gene Location: 79-636 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 145-337 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 45-337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: UUJG01000068.1 (454593 bp)
Overview 1 RT 1: 325549-331795 bp 2 RT 2: 350562-354344 bp Neighborhood of RT #1 [325549, 331795] DUF4297 DUF1837 RVT-Retrons Neighborhood of RT #2 [350562, 354344] xerC RVT-G2L4 CxxC_CXXC_SSSS Feature: gene Location: 325549-327165 bp Feature: domain Description: DUF4297 Location: 325576-326176 bp Feature: domain Description: DUF42 97 Location: 32 5576-32 6176 bp Feature: domain Description: DUF1837 Location: 326431-327109 bp Feature: domain Description: DUF1837 Location: 32 6431-32 7109 bp Feature: gene Location: 327656-328891 bp Feature: gene Location: 329078-330253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 329354-329981 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 9354-32 9981 bp Feature: gene Location: 330280-331473 bp Feature: gene Location: 331523-331795 bp Feature: gene Location: 350562-351368 bp Feature: domain Description: xerC Location: 350718-351354 bp Feature: domain Description: xerC Location: 350718-351354 bp Feature: gene Location: 351961-352155 bp Feature: gene Location: 352190-353479 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 352436-353021 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 352 436-35302 1 bp Feature: gene Location: 353584-353766 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 353614-353719 bp Feature: domain Description: CxxC_CXXC_SSSS Location: 353614-353719 bp Feature: gene Location: 353883-354344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4297 (pfam14130), DUF1837 (pfam08878), RVT-Retrons, xerC (PRK01287), RVT-G2L4, CxxC_CXXC_SSSS (smart00834)

Seq: UUJG01000074.1 (343 bp)
Overview 1 RT 1: 2-305 bp Neighborhood of RT #1 [2, 340] RVT-UNC Feature: gene Location: 2-340 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 29-305 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 29-3 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-G2L4/RVT-UG27(RVT-UNC)

Seq: UUJG01000001.1 (465385 bp)
Overview 1 RT 1: 342645-351604 bp Neighborhood of RT #1 [342645, 351762] ParE COG3905 RVT-UG5 BRR2 BRR2 Integrase_1 Feature: gene Location: 342645-342935 bp Feature: domain Description: ParE Location: 342648-342918 bp Feature: domain Description: ParE Location: 34 264 8-34 2918 bp Feature: gene Location: 342898-343161 bp Feature: domain Description: COG3905 Location: 342913-343120 bp Feature: domain Description: COG3905 Location: 34 2913-34 3120 bp Feature: gene Location: 343828-347064 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 344356-344839 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 34 4 356-34 4 839 bp Feature: gene Location: 347280-349397 bp Feature: domain Description: BRR2 Location: 347532-347916 bp Feature: domain Description: BRR2 Location: 34 7532-34 7916 bp Feature: domain Description: BRR2 Location: 348186-348756 bp Feature: domain Description: BRR2 Location: 34 8186-34 8756 bp Feature: gene Location: 350782-351762 bp Feature: domain Description: Integrase_1 Location: 351169-351604 bp Feature: domain Description: Integrase_1 Location: 351169-351604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), COG3905 (Predicted transcriptional regulator ), RVT-UG5, BRR2 (COG1204), Integrase_1 (pfam12835)