myRT

myRT report for GCA_900607395.1_ecoli003

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Seq: UWVE01000001.1 (4736110 bp)
Overview 1 RT 1: 562874-566757 bp 2 RT 2: 4437759-4440180 bp Neighborhood of RT #1 [562874, 566762] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [4437759, 4440180] SLATT_5 RVT-UG17 Feature: gene Location: 562874-563590 bp Ori: VCV36218.1 Gene: rph Feature: domain Description: rph Location: 562877-563585 bp Feature: domain Description: rph Location: 562877-563585 bp Feature: gene Location: 563657-564298 bp Ori: VCV36225.1 Gene: pyrE_1 Feature: domain Description: pyrE Location: 563660-564293 bp Feature: domain Description: pyrE Location: 563660-564293 bp Feature: gene Location: 564596-565555 bp Ori: VCV36233.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 564731-565280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 564731 -565280 bp Feature: gene Location: 565601-566197 bp Ori: VCV36240.1 Gene: slmA Feature: domain Description: slmA Location: 565607-566183 bp Feature: domain Description: slmA Location: 565607-5661 83 bp Feature: gene Location: 566304-566762 bp Ori: VCV36247.1 Gene: dut Feature: domain Description: dut Location: 566310-566757 bp Feature: domain Description: dut Location: 56631 0-566757 bp Feature: gene Location: 4437759-4437926 bp Feature: gene Location: 4438053-4438571 bp Ori: VCV63672.1 Feature: domain Description: SLATT_5 Location: 4438059-4438566 bp Feature: domain Description: SLATT_5 Location: 4438059-4438566 bp Feature: gene Location: 4438578-4439282 bp Ori: VCV63676.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4438800-4439277 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4438800-4439277 bp Feature: gene Location: 4439369-4439938 bp Feature: gene Location: 4440046-4440180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), SLATT_5 (pfam18160), RVT-UG17

Seq: UWVE01000003.1 (89752 bp)
Overview 1 RT 1: 37351-41788 bp Neighborhood of RT #1 [37351, 41793] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 37351-37542 bp Feature: gene Location: 37780-38391 bp Feature: gene Location: 38966-40867 bp Ori: VCV70323.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39233-40064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 33-40064 bp Feature: domain Description: Intron_maturas2 Location: 40178-40436 bp Feature: domain Description: Intron_maturas2 Location: 40178-40436 bp Feature: domain Description: HNHc Note: nucleases Location: 40610-40772 bp Feature: domain Description: HNHc Note: nucleases Location: 40610-40772 bp Feature: gene Location: 41062-41502 bp Ori: VCV70324.1 Gene: ssb_2 Feature: domain Description: PRK13732 Location: 41065-41500 bp Feature: domain Description: PRK13732 Location: 41065-41500 bp Feature: gene Location: 41560-41793 bp Ori: VCV70325.1 Feature: domain Description: DUF905 Location: 41590-41788 bp Feature: domain Description: DUF905 Location: 41590-41788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)