myRT

myRT report for GCA_900607445.1_ecoli004

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Seq: UWVG01000001.1 Escherichia coli isolate ecoli004 genome assembly, contig: ecoli004-contig000, whole genome shotgun sequence (5229275 bp)
Overview 1 RT 1: 20986-24432 bp 2 RT 2: 39390-42933 bp 3 RT 3: 1940243-1943620 bp 4 RT 4: 3906987-3913018 bp 5 RT 5: 4587317-4591604 bp 6 RT 6: 5214700-5217172 bp Neighborhood of RT #1 [20986, 24432] PHA02517 RVT-GII GIIM Neighborhood of RT #2 [39390, 42935] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C Dps Neighborhood of RT #3 [1940243, 1943685] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3906987, 3913018] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Neighborhood of RT #5 [4587317, 4591612] RVT-GII RVT-GII GIIM YesM Neighborhood of RT #6 [5214700, 5217172] PHA02517 group_II_RT_mat RVT-GII Feature: gene Location: 20986-21258 bp Feature: gene Location: 21326-21766 bp Feature: domain Description: PHA02517 Location: 21329-21731 bp Feature: domain Description: PHA0251 7 Location: 21 329-21 731 bp Feature: gene Location: 21895-23415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22168-22897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 68-22897 bp Feature: domain Description: GIIM Note: maturase Location: 22972-23170 bp Feature: domain Description: GIIM Note: maturase Location: 22972-231 70 bp Feature: gene Location: 23709-24080 bp Feature: gene Location: 24151-24432 bp Feature: gene Location: 39390-40451 bp Feature: domain Description: COG4584 Location: 39396-39789 bp Feature: domain Description: COG4584 Location: 39396-39789 bp Feature: domain Description: COG4584 Location: 39903-40317 bp Feature: domain Description: COG4584 Location: 39903-4031 7 bp Feature: gene Location: 40468-41223 bp Feature: domain Description: IstB_IS21_ATP Location: 40540-40624 bp Feature: domain Description: IstB_IS21 _ATP Location: 40540-40624 bp Feature: domain Description: IstB_IS21 Location: 40633-41158 bp Feature: domain Description: IstB_IS21 Location: 40633-41 1 58 bp Feature: gene Location: 41365-41772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41383-41764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 383-41 764 bp Feature: gene Location: 41890-42417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41896-42040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 896-42040 bp Feature: domain Description: GIIM Note: maturase Location: 42118-42343 bp Feature: domain Description: GIIM Note: maturase Location: 421 1 8-42343 bp Feature: gene Location: 42533-42679 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42545-42656 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 42545-42656 bp Feature: gene Location: 42771-42935 bp Feature: domain Description: Dps Location: 42774-42933 bp Feature: domain Description: Dps Location: 42774-42933 bp Feature: gene Location: 1940243-1940563 bp Feature: gene Location: 1940529-1940975 bp Feature: domain Description: PHA02517 Location: 1940532-1940973 bp Feature: domain Description: PHA0251 7 Location: 1 940532-1 940973 bp Feature: gene Location: 1941092-1942624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1941374-1942106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 941 374-1 9421 06 bp Feature: domain Description: GIIM Note: maturase Location: 1942181-1942379 bp Feature: domain Description: GIIM Note: maturase Location: 1 9421 81 -1 942379 bp Feature: gene Location: 1942589-1942993 bp Feature: gene Location: 1943206-1943685 bp Feature: domain Description: PHA02517 Location: 1943266-1943620 bp Feature: domain Description: PHA0251 7 Location: 1 943266-1 943620 bp Feature: gene Location: 3906987-3907907 bp Feature: domain Description: AbiEii Location: 3907029-3907770 bp Feature: domain Description: AbiEii Location: 3907029-3907770 bp Feature: gene Location: 3907894-3908697 bp Feature: domain Description: AbiEi_3_N Location: 3907927-3908188 bp Feature: domain Description: AbiEi_3_N Location: 3907927-39081 88 bp Feature: domain Description: AbiEi_3 Location: 3908200-3908656 bp Feature: domain Description: AbiEi_3 Location: 3908200-3908656 bp Feature: gene Location: 3908992-3912201 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3909520-3910009 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3909520-391 0009 bp Feature: domain Description: nitrilase Location: 3911515-3912112 bp Feature: domain Description: nitrilase Location: 391 1 51 5-391 21 1 2 bp Feature: gene Location: 3912362-3912502 bp Feature: domain Description: Phage_ASH Location: 3912389-3912482 bp Feature: domain Description: Phage_ASH Location: 391 2389-391 2482 bp Feature: gene Location: 3912548-3913018 bp Feature: gene Location: 4587317-4588234 bp Feature: gene Location: 4588329-4588481 bp Feature: gene Location: 4588710-4589249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4589040-4589118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4589040-45891 1 8 bp Feature: gene Location: 4589277-4589798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4589283-4589565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4589283-4589565 bp Feature: domain Description: GIIM Note: maturase Location: 4589613-4589793 bp Feature: domain Description: GIIM Note: maturase Location: 458961 3-4589793 bp Feature: gene Location: 4590122-4590310 bp Feature: gene Location: 4590350-4591612 bp Feature: domain Description: YesM Location: 4590863-4591604 bp Feature: domain Description: YesM Location: 4590863-4591 604 bp Feature: gene Location: 5214700-5214855 bp Feature: domain Description: PHA02517 Location: 5214703-5214835 bp Feature: domain Description: PHA0251 7 Location: 521 4703-521 4835 bp Feature: gene Location: 5214984-5215556 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5214990-5215302 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 521 4990-521 5302 bp Feature: gene Location: 5215571-5216308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5215685-5216102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 5685-521 61 02 bp Feature: gene Location: 5216462-5216887 bp Feature: gene Location: 5216921-5217172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), DDE_Tnp_IS66_C (pfam13817), Dps (COG0783), AbiEii (pfam08843), AbiEi_3_N (pfam17194)
AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554), YesM (COG2972), group_II_RT_mat (TIGR04416)