myRT

myRT report for GCA_900607485.1_ecoli007

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Seq: UWVK01000002.1 Escherichia coli isolate ecoli007 genome assembly, contig: ecoli007-contig001, whole genome shotgun sequence (121018 bp)
Overview 1 RT 1: 44635-48871 bp Neighborhood of RT #1 [44635, 48871] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 44635-44868 bp Feature: domain Description: DUF905 Location: 44665-44863 bp Feature: domain Description: DUF905 Location: 44665-44863 bp Feature: gene Location: 44926-45366 bp Feature: domain Description: PRK13732 Location: 44932-45364 bp Feature: domain Description: PRK1 3732 Location: 44932-45364 bp Feature: gene Location: 45561-47462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45828-46659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45828-46659 bp Feature: domain Description: Intron_maturas2 Location: 46773-47031 bp Feature: domain Description: Intron_maturas2 Location: 46773-47031 bp Feature: domain Description: HNHc Note: nucleases Location: 47205-47367 bp Feature: domain Description: HNHc Note: nucleases Location: 47205-47367 bp Feature: gene Location: 48179-48415 bp Feature: gene Location: 48416-48871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: UWVK01000001.1 Escherichia coli isolate ecoli007 genome assembly, contig: ecoli007-contig000, whole genome shotgun sequence (5276412 bp)
Overview 1 RT 1: 467430-471721 bp 2 RT 2: 785200-790098 bp 3 RT 3: 1117631-1123874 bp 4 RT 4: 3094495-3098279 bp 5 RT 5: 3107476-3111456 bp 6 RT 6: 5023291-5026420 bp Neighborhood of RT #1 [467430, 471721] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [785200, 790100] TIR_2 RVT-Retrons PRK10597 prfC Neighborhood of RT #3 [1117631, 1124011] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #4 [3094495, 3098296] InsE RVT-GII GIIM PHA02517 FadR Neighborhood of RT #5 [3107476, 3111482] Asparaginase_2 RVT-GII DcuC Neighborhood of RT #6 [5023291, 5026422] PHA02517 RVT-GII group_II_RT_mat PHA02517 Feature: gene Location: 467430-468692 bp Feature: domain Description: YesM Location: 467943-468684 bp Feature: domain Description: YesM Location: 467943-468684 bp Feature: gene Location: 468722-468892 bp Feature: gene Location: 469242-469763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469248-469530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4692 48-469530 bp Feature: domain Description: GIIM Note: maturase Location: 469578-469758 bp Feature: domain Description: GIIM Note: maturase Location: 469578-469758 bp Feature: gene Location: 469791-470330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470121-470199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47012 1-470199 bp Feature: gene Location: 470361-470558 bp Feature: gene Location: 470816-471721 bp Feature: gene Location: 785200-785493 bp Feature: gene Location: 786075-786728 bp Feature: domain Description: TIR_2 Location: 786333-786624 bp Feature: domain Description: TIR_2 Location: 786333-78662 4 bp Feature: gene Location: 786838-787674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 787129-787663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78712 9-787663 bp Feature: gene Location: 788034-788294 bp Feature: domain Description: PRK10597 Location: 788037-788277 bp Feature: domain Description: PRK10597 Location: 788037-7882 77 bp Feature: gene Location: 788514-790100 bp Feature: domain Description: prfC Location: 788532-790098 bp Feature: domain Description: prfC Location: 788532 -790098 bp Feature: gene Location: 1117631-1117897 bp Feature: domain Description: Phage_integrase Location: 1117697-1117793 bp Feature: domain Description: Phage_integrase Location: 1117697-1117793 bp Feature: gene Location: 1117980-1118450 bp Feature: gene Location: 1118797-1122006 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1119325-1119814 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 111932 5-1119814 bp Feature: domain Description: nitrilase Location: 1121320-1121917 bp Feature: domain Description: nitrilase Location: 112 132 0-112 1917 bp Feature: gene Location: 1122301-1123104 bp Feature: domain Description: AbiEi_3_N Location: 1122334-1122595 bp Feature: domain Description: AbiEi_3_N Location: 112 2 334-112 2 595 bp Feature: domain Description: AbiEi_3 Location: 1122607-1123063 bp Feature: domain Description: AbiEi_3 Location: 112 2 607-112 3063 bp Feature: gene Location: 1123091-1124011 bp Feature: domain Description: AbiEii Location: 1123133-1123874 bp Feature: domain Description: AbiEii Location: 112 3133-112 3874 bp Feature: gene Location: 3094495-3094806 bp Feature: domain Description: InsE Location: 3094498-3094789 bp Feature: domain Description: InsE Location: 3094498-3094789 bp Feature: gene Location: 3094830-3095219 bp Feature: gene Location: 3095850-3097373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096123-3096855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309612 3-3096855 bp Feature: domain Description: GIIM Note: maturase Location: 3096930-3097128 bp Feature: domain Description: GIIM Note: maturase Location: 3096930-309712 8 bp Feature: gene Location: 3097502-3097942 bp Feature: domain Description: PHA02517 Location: 3097505-3097913 bp Feature: domain Description: PHA02 517 Location: 3097505-3097913 bp Feature: gene Location: 3098162-3098296 bp Feature: domain Description: FadR Location: 3098177-3098279 bp Feature: domain Description: FadR Location: 3098177-30982 79 bp Feature: gene Location: 3107476-3108507 bp Feature: domain Description: Asparaginase_2 Location: 3107566-3108499 bp Feature: domain Description: Asparaginase_2 Location: 3107566-3108499 bp Feature: gene Location: 3108832-3108981 bp Feature: gene Location: 3109029-3109475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3109335-3109437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3109335-3109437 bp Feature: gene Location: 3109697-3110068 bp Feature: gene Location: 3110121-3111482 bp Feature: domain Description: DcuC Location: 3110124-3111456 bp Feature: domain Description: DcuC Location: 311012 4-3111456 bp Feature: gene Location: 5023291-5023419 bp Feature: gene Location: 5023467-5023748 bp Feature: domain Description: PHA02517 Location: 5023473-5023683 bp Feature: domain Description: PHA02 517 Location: 502 3473-502 3683 bp Feature: gene Location: 5024340-5025272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5024613-5025069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 4613-502 5069 bp Feature: gene Location: 5025287-5025859 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5025293-5025605 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 502 52 93-502 5605 bp Feature: gene Location: 5026036-5026422 bp Feature: domain Description: PHA02517 Location: 5026039-5026420 bp Feature: domain Description: PHA02 517 Location: 502 6039-502 642 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), TIR_2 (pfam13676), RVT-Retrons, PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424)
AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), FadR (COG2186), Asparaginase_2 (pfam01112), DcuC (TIGR00771), group_II_RT_mat (TIGR04416)