myRT

myRT report for GCA_900607635.1_kpneu012

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Seq: UWVT01000002.1 (231186 bp)
Overview 1 RT 1: 165889-169931 bp Neighborhood of RT #1 [165889, 169936] RVT-GII PRK10276 umuC Feature: gene Location: 165889-166119 bp Feature: gene Location: 166632-167048 bp Feature: gene Location: 166958-167836 bp Ori: VCX09093.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167360-167732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67360-1 67732 bp Feature: gene Location: 168240-168665 bp Ori: VCX09095.1 Gene: lexA_3 Feature: domain Description: PRK10276 Location: 168243-168651 bp Feature: domain Description: PRK1 0276 Location: 1 68243-1 68651 bp Feature: gene Location: 168665-169936 bp Ori: VCX09097.1 Gene: dinB1_2 Feature: domain Description: umuC Location: 168668-169931 bp Feature: domain Description: umuC Location: 1 68668-1 69931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: UWVT01000004.1 (64873 bp)
Overview 1 RT 1: 194-4575 bp 2 RT 2: 53477-59385 bp Neighborhood of RT #1 [194, 4802] group_II_RT_mat RVT-GII parB_part Neighborhood of RT #2 [53477, 59393] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 194-376 bp Feature: gene Location: 373-723 bp Ori: VCX09841.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 430-649 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 430-649 bp Feature: gene Location: 1131-1574 bp Ori: VCX09843.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1383-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1383-1530 bp Feature: gene Location: 2125-2979 bp Feature: gene Location: 3933-4802 bp Ori: VCX09847.1 Gene: virB_2 Feature: domain Description: parB_part Location: 4083-4575 bp Feature: domain Description: parB_part Location: 4083-4575 bp Feature: gene Location: 53477-53908 bp Feature: gene Location: 54388-55353 bp Ori: VCX09986.1 Gene: traC_5 Feature: domain Description: ArdC Location: 54514-55348 bp Feature: domain Description: ArdC Location: 54514-55348 bp Feature: gene Location: 55944-57179 bp Ori: VCX09988.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56223-56910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 562 2 3-56910 bp Feature: gene Location: 57691-58122 bp Ori: VCX09990.1 Gene: lexA_6 Feature: domain Description: PRK10276 Location: 57742-58105 bp Feature: domain Description: PRK102 76 Location: 57742 -58105 bp Feature: gene Location: 58122-59393 bp Ori: VCX09992.1 Gene: dinB1_5 Feature: domain Description: umuC Location: 58125-59385 bp Feature: domain Description: umuC Location: 5812 5-59385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, parB_part (TIGR00180), ArdC (COG4227), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: UWVT01000001.1 (5476347 bp)
Overview 1 RT 1: 2140851-2145589 bp 2 RT 2: 2805737-2808799 bp Neighborhood of RT #1 [2140851, 2145589] AAA_21 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #2 [2805737, 2808816] PRK10724 SmpB RVT-UG11 PRK09678 Feature: gene Location: 2140851-2141438 bp Ori: VCW42456.1 Feature: domain Description: AAA_21 Location: 2141157-2141379 bp Feature: domain Description: AAA_21 Location: 2141157-21413 79 bp Feature: gene Location: 2141566-2142258 bp Feature: gene Location: 2142721-2143638 bp Ori: VCW42460.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2142901-2143435 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2142901-2143 43 5 bp Feature: gene Location: 2144472-2145341 bp Ori: VCW42462.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2144994-2145165 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2144994-2145165 bp Feature: gene Location: 2145338-2145589 bp Feature: gene Location: 2805737-2806174 bp Ori: VCW43609.1 Gene: ratA Feature: domain Description: PRK10724 Location: 2805740-2806169 bp Feature: domain Description: PRK10724 Location: 2805740-2806169 bp Feature: gene Location: 2806324-2806806 bp Ori: VCW43610.1 Gene: smpB Feature: domain Description: SmpB Location: 2806354-2806798 bp Feature: domain Description: SmpB Location: 28063 54-2806798 bp Feature: gene Location: 2807421-2808194 bp Ori: VCW43611.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2807556-2808009 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2807556-2808009 bp Feature: gene Location: 2808163-2808336 bp Feature: gene Location: 2808598-2808816 bp Ori: VCW43614.1 Feature: domain Description: PRK09678 Location: 2808601-2808799 bp Feature: domain Description: PRK09678 Location: 2808601-2808799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)