myRT

myRT report for GCA_900607655.1_kpneu014

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Seq: UWVV01000002.1 (342684 bp)
Overview 1 RT 1: 28543-35007 bp 2 RT 2: 76041-81973 bp 3 RT 3: 325170-329905 bp Neighborhood of RT #1 [28543, 35051] zf-ISL3 DDE_Tnp_ISL3 RVT-GII HAD_SAK_2 Neighborhood of RT #2 [76041, 82038] PRK10276 RVT-GII InsQ cas7_csf2 Neighborhood of RT #3 [325170, 329905] PHA02517 zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII Feature: gene Location: 28543-28923 bp Ori: VCX10838.1 Feature: domain Description: zf-ISL3 Location: 28675-28786 bp Feature: domain Description: zf-ISL3 Location: 28675-28786 bp Feature: gene Location: 29005-29751 bp Ori: VCX10839.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 29023-29710 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 29023-2971 0 bp Feature: gene Location: 30143-30835 bp Ori: VCX10840.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30542-30833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30542-30833 bp Feature: gene Location: 31847-32113 bp Feature: gene Location: 34056-35051 bp Ori: VCX10842.1 Feature: domain Description: HAD_SAK_2 Location: 34761-35007 bp Feature: domain Description: HAD_SAK_2 Location: 34761 -35007 bp Feature: gene Location: 76041-76463 bp Ori: VCX10884.1 Gene: lexA_5 Feature: domain Description: PRK10276 Location: 76047-76449 bp Feature: domain Description: PRK1 0276 Location: 76047-76449 bp Feature: gene Location: 76828-77244 bp Feature: gene Location: 77385-78038 bp Ori: VCX10886.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77790-78027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77790-78027 bp Feature: gene Location: 78729-79082 bp Ori: VCX10887.1 Feature: domain Description: InsQ Location: 78783-79032 bp Feature: domain Description: InsQ Location: 78783-79032 bp Feature: gene Location: 81007-82038 bp Ori: VCX10888.1 Feature: domain Description: cas7_csf2 Location: 81055-81973 bp Feature: domain Description: cas7_csf2 Location: 81 055-81 973 bp Feature: gene Location: 325170-326207 bp Ori: VCX11179.1 Feature: domain Description: PHA02517 Location: 325410-326178 bp Feature: domain Description: PHA0251 7 Location: 32541 0-3261 78 bp Feature: gene Location: 326379-327599 bp Ori: VCX11180.1 Feature: domain Description: zf-ISL3 Location: 326511-326637 bp Feature: domain Description: zf-ISL3 Location: 32651 1 -326637 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 326655-326802 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 326655-326802 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 326853-327558 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 326853-327558 bp Feature: gene Location: 327998-328873 bp Ori: VCX11181.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328397-328769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328397-328769 bp Feature: gene Location: 328783-329199 bp Feature: gene Location: 329354-329905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), DDE_Tnp_ISL3 (pfam01610), RVT-GII, HAD_SAK_2 (pfam18143), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), InsQ (COG0675), cas7_csf2 (TIGR03115), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_ISL3 (pfam13542)

Seq: UWVV01000001.1 (5402593 bp)
Overview 1 RT 1: 907361-913591 bp 2 RT 2: 4747724-4753142 bp Neighborhood of RT #1 [907361, 913596] YejM PRK09951 RVT-UG11 umuC PRK10276 Neighborhood of RT #2 [4747724, 4753144] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 907361-909121 bp Ori: VCW53510.1 Gene: yejM Feature: domain Description: YejM Location: 907364-909119 bp Feature: domain Description: YejM Location: 907364-909119 bp Feature: gene Location: 909460-910128 bp Ori: VCW53512.1 Gene: yedK_1 Feature: domain Description: PRK09951 Location: 909463-910126 bp Feature: domain Description: PRK09951 Location: 909463-91012 6 bp Feature: gene Location: 910329-911237 bp Ori: VCW53514.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 910602-911058 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 910602 -911058 bp Feature: gene Location: 911910-913220 bp Ori: VCW53516.1 Gene: dinB1_1 Feature: domain Description: umuC Location: 911958-913218 bp Feature: domain Description: umuC Location: 911958-9132 18 bp Feature: gene Location: 913177-913596 bp Ori: VCW53519.1 Gene: lexA_1 Feature: domain Description: PRK10276 Location: 913180-913591 bp Feature: domain Description: PRK102 76 Location: 913180-913591 bp Feature: gene Location: 4747724-4748863 bp Ori: VCW61117.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4747907-4748807 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4747907-4748807 bp Feature: gene Location: 4749034-4749276 bp Ori: VCW61119.1 Gene: dinI_2 Feature: domain Description: DinI Location: 4749085-4749265 bp Feature: domain Description: DinI Location: 4749085-47492 65 bp Feature: gene Location: 4749891-4751378 bp Ori: VCW61121.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4750296-4750986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47502 96-4750986 bp Feature: gene Location: 4751457-4751876 bp Ori: VCW61123.1 Gene: lexA_4 Feature: domain Description: PRK10276 Location: 4751460-4751871 bp Feature: domain Description: PRK102 76 Location: 4751460-4751871 bp Feature: gene Location: 4751879-4753144 bp Ori: VCW61125.1 Gene: dinB1_2 Feature: domain Description: umuC Location: 4751882-4753142 bp Feature: domain Description: umuC Location: 4751882 -4753142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YejM (COG3083), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII