myRT

myRT report for GCA_900607665.1_ecoli009

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Seq: UWVU01000002.1 (342712 bp)
Overview 1 RT 1: 28826-32581 bp 2 RT 2: 333286-335959 bp Neighborhood of RT #1 [28826, 32581] RVT_N RVT-GII GIIM HNHc DUF5431 Neighborhood of RT #2 [333286, 335959] RVT-GII RVT_N RVT-GII Feature: gene Location: 28826-29146 bp Feature: gene Location: 29484-29621 bp Feature: gene Location: 29834-31519 bp Feature: domain Description: RVT_N Location: 29885-30125 bp Feature: domain Description: RVT_N Location: 29885-301 25 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30173-30818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 73-3081 8 bp Feature: domain Description: GIIM Note: maturase Location: 30869-31103 bp Feature: domain Description: GIIM Note: maturase Location: 30869-31 1 03 bp Feature: domain Description: HNHc Note: nucleases Location: 31316-31475 bp Feature: domain Description: HNHc Note: nucleases Location: 31 31 6-31 475 bp Feature: gene Location: 32022-32327 bp Feature: domain Description: DUF5431 Location: 32025-32193 bp Feature: domain Description: DUF5431 Location: 32025-321 93 bp Feature: gene Location: 32384-32581 bp Feature: gene Location: 333286-333423 bp Feature: gene Location: 333734-334012 bp Feature: gene Location: 334221-334658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334224-334575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334224-334575 bp Feature: gene Location: 334856-335134 bp Feature: domain Description: RVT_N Location: 334904-334994 bp Feature: domain Description: RVT_N Location: 334904-334994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335057-335102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335057-3351 02 bp Feature: gene Location: 335337-335741 bp Feature: gene Location: 335828-335959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF5431 (pfam17496)

Seq: UWVU01000004.1 (132594 bp)
Overview 1 RT 1: 20246-23967 bp 2 RT 2: 108199-111191 bp 3 RT 3: 128971-131212 bp Neighborhood of RT #1 [20246, 24020] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Neighborhood of RT #2 [108199, 111191] InsE PHA02517 RVT-GII GIIM Neighborhood of RT #3 [128971, 131212] PHA02517 RVT-GII RVT-GII GIIM Feature: gene Location: 20246-20725 bp Feature: domain Description: PHA02517 Location: 20306-20660 bp Feature: domain Description: PHA02 517 Location: 2 0306-2 0660 bp Feature: gene Location: 21017-21220 bp Feature: gene Location: 21305-22837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21587-22319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1587-2 2 319 bp Feature: domain Description: GIIM Note: maturase Location: 22394-22592 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 394-2 2 592 bp Feature: gene Location: 22954-23400 bp Feature: domain Description: PHA02517 Location: 22957-23398 bp Feature: domain Description: PHA02 517 Location: 2 2 957-2 3398 bp Feature: gene Location: 23403-24020 bp Feature: domain Description: autotrans_barl Location: 23526-23967 bp Feature: domain Description: autotrans_barl Location: 2 352 6-2 3967 bp Feature: gene Location: 108199-108603 bp Feature: domain Description: InsE Location: 108229-108565 bp Feature: domain Description: InsE Location: 1082 2 9-108565 bp Feature: gene Location: 108632-108988 bp Feature: domain Description: PHA02517 Location: 108635-108944 bp Feature: domain Description: PHA02 517 Location: 108635-108944 bp Feature: gene Location: 109105-110421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109222-109903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 2 2 -109903 bp Feature: domain Description: GIIM Note: maturase Location: 109978-110176 bp Feature: domain Description: GIIM Note: maturase Location: 109978-110176 bp Feature: gene Location: 110569-110769 bp Feature: gene Location: 110904-111191 bp Feature: gene Location: 128971-129129 bp Feature: domain Description: PHA02517 Location: 129013-129076 bp Feature: domain Description: PHA02 517 Location: 12 9013-12 9076 bp Feature: gene Location: 129514-129714 bp Feature: gene Location: 129892-130200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129988-130171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9988-130171 bp Feature: gene Location: 130299-130664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130335-130467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130335-130467 bp Feature: gene Location: 130679-130990 bp Feature: domain Description: GIIM Note: maturase Location: 130826-130958 bp Feature: domain Description: GIIM Note: maturase Location: 13082 6-130958 bp Feature: gene Location: 131084-131212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), autotrans_barl (TIGR01414), InsE (COG2963)

Seq: UWVU01000001.1 (5114556 bp)
Overview 1 RT 1: 1582093-1585898 bp 2 RT 2: 1600833-1604227 bp 3 RT 3: 1893561-1897900 bp 4 RT 4: 1965244-1969022 bp 5 RT 5: 2172113-2174644 bp 6 RT 6: 3172645-3175430 bp 7 RT 7: 3575218-3578462 bp 8 RT 8: 4098846-4101798 bp 9 RT 9: 4627333-4632778 bp Neighborhood of RT #1 [1582093, 1586059] InsE PHA02517 RVT-GII GIIM PHA02517 PapC_N Neighborhood of RT #2 [1600833, 1604227] PHA02517 RVT-GII RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1893561, 1897902] PHA02517 RVT-GII GIIM PHA02517 PRK15304 Neighborhood of RT #4 [1965244, 1969087] PRK10736 PHA02517 RVT-GII GIIM RVT-GII PHA02517 Neighborhood of RT #5 [2172113, 2174661] PHA02517 RVT-GII GIIM YkfC Neighborhood of RT #6 [3172645, 3175501] PHA02517 RVT-GII group_II_RT_mat PHA02517 Neighborhood of RT #7 [3575218, 3578462] QdoI PHA02517 RVT-GII GIIM YkfC Neighborhood of RT #8 [4098846, 4101800] PHA02517 RVT-GII group_II_RT_mat PHA02517 Neighborhood of RT #9 [4627333, 4632843] DUF1737 Tra5 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1582093-1582419 bp Feature: domain Description: InsE Location: 1582096-1582417 bp Feature: domain Description: InsE Location: 1582096-1582417 bp Feature: gene Location: 1582464-1582895 bp Feature: domain Description: PHA02517 Location: 1582488-1582830 bp Feature: domain Description: PHA02517 Location: 1582488-158283 0 bp Feature: gene Location: 1583487-1584929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583760-1584492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583 760-1584492 bp Feature: domain Description: GIIM Note: maturase Location: 1584567-1584765 bp Feature: domain Description: GIIM Note: maturase Location: 1584567-1584765 bp Feature: gene Location: 1585106-1585402 bp Feature: domain Description: PHA02517 Location: 1585115-1585166 bp Feature: domain Description: PHA02517 Location: 1585115-1585166 bp Feature: gene Location: 1585451-1586059 bp Feature: domain Description: PapC_N Location: 1585547-1585898 bp Feature: domain Description: PapC_N Location: 1585547-1585898 bp Feature: gene Location: 1600833-1600961 bp Feature: gene Location: 1601009-1601290 bp Feature: domain Description: PHA02517 Location: 1601015-1601225 bp Feature: domain Description: PHA02517 Location: 1601015-1601225 bp Feature: gene Location: 1601882-1602289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1602155-1602269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1602155-1602269 bp Feature: gene Location: 1602318-1603331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1602351-1602885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16023 51-1602885 bp Feature: domain Description: GIIM Note: maturase Location: 1602960-1603158 bp Feature: domain Description: GIIM Note: maturase Location: 1602960-1603 158 bp Feature: gene Location: 1603575-1603961 bp Feature: domain Description: PHA02517 Location: 1603578-1603959 bp Feature: domain Description: PHA02517 Location: 1603 578-1603 959 bp Feature: gene Location: 1604069-1604227 bp Feature: gene Location: 1893561-1893842 bp Feature: domain Description: PHA02517 Location: 1893567-1893777 bp Feature: domain Description: PHA02517 Location: 1893 567-1893 777 bp Feature: gene Location: 1894135-1894398 bp Feature: gene Location: 1894422-1895855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894695-1895424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894695-1895424 bp Feature: domain Description: GIIM Note: maturase Location: 1895499-1895697 bp Feature: domain Description: GIIM Note: maturase Location: 1895499-1895697 bp Feature: gene Location: 1896028-1896492 bp Feature: domain Description: PHA02517 Location: 1896037-1896490 bp Feature: domain Description: PHA02517 Location: 189603 7-1896490 bp Feature: gene Location: 1896616-1897902 bp Feature: domain Description: PRK15304 Location: 1896619-1897900 bp Feature: domain Description: PRK153 04 Location: 1896619-1897900 bp Feature: gene Location: 1965244-1965870 bp Feature: domain Description: PRK10736 Location: 1965247-1965868 bp Feature: domain Description: PRK1073 6 Location: 1965247-1965868 bp Feature: gene Location: 1965942-1966388 bp Feature: domain Description: PHA02517 Location: 1965945-1966386 bp Feature: domain Description: PHA02517 Location: 1965945-19663 86 bp Feature: gene Location: 1966503-1967108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1966515-1966590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1966515-1966590 bp Feature: domain Description: GIIM Note: maturase Location: 1966665-1966884 bp Feature: domain Description: GIIM Note: maturase Location: 1966665-1966884 bp Feature: gene Location: 1967173-1967994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967416-1967872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967416-1967872 bp Feature: gene Location: 1968116-1968316 bp Feature: gene Location: 1968608-1969087 bp Feature: domain Description: PHA02517 Location: 1968668-1969022 bp Feature: domain Description: PHA02517 Location: 1968668-1969022 bp Feature: gene Location: 2172113-2172514 bp Feature: gene Location: 2172574-2173038 bp Feature: domain Description: PHA02517 Location: 2172583-2173036 bp Feature: domain Description: PHA02517 Location: 2172583 -2173 03 6 bp Feature: gene Location: 2173204-2174220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2173237-2173771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2173 23 7-2173 771 bp Feature: domain Description: GIIM Note: maturase Location: 2173846-2174044 bp Feature: domain Description: GIIM Note: maturase Location: 2173 846-2174044 bp Feature: gene Location: 2174265-2174429 bp Feature: gene Location: 2174500-2174661 bp Feature: domain Description: YkfC Location: 2174509-2174644 bp Feature: domain Description: YkfC Location: 2174509-2174644 bp Feature: gene Location: 3172645-3173070 bp Feature: domain Description: PHA02517 Location: 3172669-3173005 bp Feature: domain Description: PHA02517 Location: 3 172669-3 173 005 bp Feature: gene Location: 3173367-3173561 bp Feature: gene Location: 3173656-3174585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3173929-3174388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 173 929-3 1743 88 bp Feature: gene Location: 3174600-3175172 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3174606-3174918 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 174606-3 174918 bp Feature: gene Location: 3175337-3175501 bp Feature: domain Description: PHA02517 Location: 3175340-3175430 bp Feature: domain Description: PHA02517 Location: 3 1753 40-3 17543 0 bp Feature: gene Location: 3575218-3575568 bp Feature: domain Description: QdoI Location: 3575284-3575536 bp Feature: domain Description: QdoI Location: 3 575284-3 57553 6 bp Feature: gene Location: 3576171-3576617 bp Feature: domain Description: PHA02517 Location: 3576174-3576615 bp Feature: domain Description: PHA02517 Location: 3 576174-3 576615 bp Feature: gene Location: 3576732-3577940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3576735-3577422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 57673 5-3 577422 bp Feature: domain Description: GIIM Note: maturase Location: 3577497-3577695 bp Feature: domain Description: GIIM Note: maturase Location: 3 577497-3 577695 bp Feature: gene Location: 3577978-3578253 bp Feature: domain Description: YkfC Location: 3577987-3578209 bp Feature: domain Description: YkfC Location: 3 577987-3 578209 bp Feature: gene Location: 3578277-3578462 bp Feature: gene Location: 4098846-4099031 bp Feature: domain Description: PHA02517 Location: 4098852-4098963 bp Feature: domain Description: PHA02517 Location: 4098852-4098963 bp Feature: gene Location: 4099051-4099422 bp Feature: gene Location: 4099716-4100567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4099989-4100445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4099989-4100445 bp Feature: gene Location: 4100665-4101237 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4100671-4100983 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4100671-4100983 bp Feature: gene Location: 4101414-4101800 bp Feature: domain Description: PHA02517 Location: 4101417-4101798 bp Feature: domain Description: PHA02517 Location: 4101417-4101798 bp Feature: gene Location: 4627333-4629186 bp Feature: domain Description: DUF1737 Location: 4627342-4627480 bp Feature: domain Description: DUF173 7 Location: 46273 42-4627480 bp Feature: domain Description: Tra5 Location: 4627711-4628827 bp Feature: domain Description: Tra5 Location: 4627711-4628827 bp Feature: gene Location: 4629696-4630142 bp Feature: domain Description: PHA02517 Location: 4629699-4630140 bp Feature: domain Description: PHA02517 Location: 4629699-463 0140 bp Feature: gene Location: 4630473-4631786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4630755-4631487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 0755-463 1487 bp Feature: domain Description: GIIM Note: maturase Location: 4631562-4631739 bp Feature: domain Description: GIIM Note: maturase Location: 463 1562-463 173 9 bp Feature: gene Location: 4631800-4632072 bp Feature: gene Location: 4632364-4632843 bp Feature: domain Description: PHA02517 Location: 4632424-4632778 bp Feature: domain Description: PHA02517 Location: 463 2424-463 2778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PapC_N (pfam13954), PRK15304 (putative fimbrial outer membrane usher protein; Provisional), PRK10736 (DNA-protecting protein DprA), YkfC (COG3344), group_II_RT_mat (TIGR04416), QdoI (COG1917)
DUF1737 (pfam08410), Tra5 (COG2801)