myRT

myRT report for GCA_900607705.1_ecoli010

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Seq: UWVZ01000001.1 Escherichia coli isolate ecoli010 genome assembly, contig: ecoli010-contig000, whole genome shotgun sequence (5282659 bp)
Overview 1 RT 1: 987046-990815 bp 2 RT 2: 2903267-2906675 bp 3 RT 3: 2921757-2924832 bp 4 RT 4: 3546618-3550907 bp 5 RT 5: 4260855-4267098 bp Neighborhood of RT #1 [987046, 990815] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [2903267, 2906809] Dps RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #3 [2921757, 2924867] YkfC RVT-GII group_II_RT_mat PHA02517 Neighborhood of RT #4 [3546618, 3550907] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #5 [4260855, 4267235] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 987046-987372 bp Feature: domain Description: InsE Location: 987049-987370 bp Feature: domain Description: InsE Location: 987049-987370 bp Feature: gene Location: 987570-987851 bp Feature: domain Description: PHA02517 Location: 987576-987786 bp Feature: domain Description: PHA0251 7 Location: 987576-987786 bp Feature: gene Location: 988443-989966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988716-989448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98871 6-989448 bp Feature: domain Description: GIIM Note: maturase Location: 989523-989721 bp Feature: domain Description: GIIM Note: maturase Location: 989523-989721 bp Feature: gene Location: 990143-990529 bp Feature: domain Description: PHA02517 Location: 990146-990527 bp Feature: domain Description: PHA0251 7 Location: 9901 46-990527 bp Feature: gene Location: 990495-990815 bp Feature: gene Location: 2903267-2903431 bp Feature: domain Description: Dps Location: 2903270-2903429 bp Feature: domain Description: Dps Location: 2903270-2903429 bp Feature: gene Location: 2903592-2903759 bp Feature: gene Location: 2903785-2904834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903803-2904457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903803-2904457 bp Feature: domain Description: GIIM Note: maturase Location: 2904535-2904760 bp Feature: domain Description: GIIM Note: maturase Location: 2904535-2904760 bp Feature: gene Location: 2904976-2905731 bp Feature: domain Description: IstB_IS21_ATP Location: 2905048-2905132 bp Feature: domain Description: IstB_IS21 _ATP Location: 2905048-29051 32 bp Feature: domain Description: IstB_IS21 Location: 2905141-2905666 bp Feature: domain Description: IstB_IS21 Location: 29051 41 -2905666 bp Feature: gene Location: 2905748-2906809 bp Feature: domain Description: COG4584 Location: 2905754-2906147 bp Feature: domain Description: COG4584 Location: 2905754-29061 47 bp Feature: domain Description: COG4584 Location: 2906261-2906675 bp Feature: domain Description: COG4584 Location: 2906261 -2906675 bp Feature: gene Location: 2921757-2922146 bp Feature: gene Location: 2922777-2923124 bp Feature: domain Description: YkfC Location: 2922786-2923089 bp Feature: domain Description: YkfC Location: 2922786-2923089 bp Feature: gene Location: 2923124-2923711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2923130-2923505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29231 30-2923505 bp Feature: gene Location: 2923726-2924298 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2923732-2924044 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2923732-2924044 bp Feature: gene Location: 2924427-2924867 bp Feature: domain Description: PHA02517 Location: 2924430-2924832 bp Feature: domain Description: PHA0251 7 Location: 2924430-2924832 bp Feature: gene Location: 3546618-3547862 bp Feature: domain Description: YesM Location: 3547113-3547854 bp Feature: domain Description: YesM Location: 35471 1 3-3547854 bp Feature: gene Location: 3547908-3548078 bp Feature: gene Location: 3548428-3548949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548434-3548716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548434-354871 6 bp Feature: domain Description: GIIM Note: maturase Location: 3548764-3548944 bp Feature: domain Description: GIIM Note: maturase Location: 3548764-3548944 bp Feature: gene Location: 3548977-3549516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3549307-3549385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3549307-3549385 bp Feature: gene Location: 3549547-3549744 bp Feature: gene Location: 3550002-3550907 bp Feature: gene Location: 4260855-4261121 bp Feature: domain Description: Phage_integrase Location: 4260921-4261017 bp Feature: domain Description: Phage_integrase Location: 4260921 -4261 01 7 bp Feature: gene Location: 4261204-4261674 bp Feature: gene Location: 4262021-4265230 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4262549-4263038 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4262549-4263038 bp Feature: domain Description: nitrilase Location: 4264544-4265141 bp Feature: domain Description: nitrilase Location: 4264544-42651 41 bp Feature: gene Location: 4265525-4266328 bp Feature: domain Description: AbiEi_3_N Location: 4265558-4265819 bp Feature: domain Description: AbiEi_3_N Location: 4265558-426581 9 bp Feature: domain Description: AbiEi_3 Location: 4265831-4266287 bp Feature: domain Description: AbiEi_3 Location: 4265831 -4266287 bp Feature: gene Location: 4266315-4267235 bp Feature: domain Description: AbiEii Location: 4266357-4267098 bp Feature: domain Description: AbiEii Location: 4266357-4267098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Dps (COG0783), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), YkfC (COG3344), group_II_RT_mat (TIGR04416)
YesM (COG2972), Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)