myRT

myRT report for GCA_900607965.1_ecoli014

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Seq: UWWW01000001.1 Escherichia coli isolate ecoli014 genome assembly, contig: ecoli014-contig000, whole genome shotgun sequence (5270751 bp)
Overview 1 RT 1: 655613-659021 bp 2 RT 2: 674464-677821 bp 3 RT 3: 1299206-1303497 bp 4 RT 4: 2013598-2019841 bp 5 RT 5: 3993702-3997181 bp Neighborhood of RT #1 [655613, 659155] Dps RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #2 [674464, 677871] RVT-GII GIIM PHA02517 zinc_ribbon_11 Neighborhood of RT #3 [1299206, 1303497] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #4 [2013598, 2019978] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #5 [3993702, 3997183] InsE PHA02517 RVT-GII group_II_RT_mat PHA02517 Feature: gene Location: 655613-655777 bp Feature: domain Description: Dps Location: 655616-655775 bp Feature: domain Description: Dps Location: 65561 6-655775 bp Feature: gene Location: 655938-656105 bp Feature: gene Location: 656131-657180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656149-656803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6561 49-656803 bp Feature: domain Description: GIIM Note: maturase Location: 656881-657106 bp Feature: domain Description: GIIM Note: maturase Location: 656881 -6571 06 bp Feature: gene Location: 657322-658077 bp Feature: domain Description: IstB_IS21_ATP Location: 657394-657478 bp Feature: domain Description: IstB_IS21 _ATP Location: 657394-657478 bp Feature: domain Description: IstB_IS21 Location: 657487-658012 bp Feature: domain Description: IstB_IS21 Location: 657487-65801 2 bp Feature: gene Location: 658094-659155 bp Feature: domain Description: COG4584 Location: 658100-658493 bp Feature: domain Description: COG4584 Location: 6581 00-658493 bp Feature: domain Description: COG4584 Location: 658607-659021 bp Feature: domain Description: COG4584 Location: 658607-659021 bp Feature: gene Location: 674464-674892 bp Feature: gene Location: 674908-675093 bp Feature: gene Location: 675117-676640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675390-676122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675390-6761 22 bp Feature: domain Description: GIIM Note: maturase Location: 676197-676395 bp Feature: domain Description: GIIM Note: maturase Location: 6761 97-676395 bp Feature: gene Location: 676769-677209 bp Feature: domain Description: PHA02517 Location: 676772-677174 bp Feature: domain Description: PHA0251 7 Location: 676772-6771 74 bp Feature: gene Location: 677461-677871 bp Feature: domain Description: zinc_ribbon_11 Location: 677503-677821 bp Feature: domain Description: zinc_ribbon_1 1 Location: 677503-677821 bp Feature: gene Location: 1299206-1300468 bp Feature: domain Description: YesM Location: 1299719-1300460 bp Feature: domain Description: YesM Location: 1 29971 9-1 300460 bp Feature: gene Location: 1300498-1300668 bp Feature: gene Location: 1301018-1301539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301024-1301306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 024-1 301 306 bp Feature: domain Description: GIIM Note: maturase Location: 1301354-1301534 bp Feature: domain Description: GIIM Note: maturase Location: 1 301 354-1 301 534 bp Feature: gene Location: 1301567-1302106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301897-1301975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 897-1 301 975 bp Feature: gene Location: 1302137-1302334 bp Feature: gene Location: 1302592-1303497 bp Feature: gene Location: 2013598-2013864 bp Feature: domain Description: Phage_integrase Location: 2013664-2013760 bp Feature: domain Description: Phage_integrase Location: 201 3664-201 3760 bp Feature: gene Location: 2013947-2014417 bp Feature: gene Location: 2014764-2017973 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2015292-2015781 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 201 5292-201 5781 bp Feature: domain Description: nitrilase Location: 2017287-2017884 bp Feature: domain Description: nitrilase Location: 201 7287-201 7884 bp Feature: gene Location: 2018268-2019071 bp Feature: domain Description: AbiEi_3_N Location: 2018301-2018562 bp Feature: domain Description: AbiEi_3_N Location: 201 8301 -201 8562 bp Feature: domain Description: AbiEi_3 Location: 2018574-2019030 bp Feature: domain Description: AbiEi_3 Location: 201 8574-201 9030 bp Feature: gene Location: 2019058-2019978 bp Feature: domain Description: AbiEii Location: 2019100-2019841 bp Feature: domain Description: AbiEii Location: 201 91 00-201 9841 bp Feature: gene Location: 3993702-3994028 bp Feature: domain Description: InsE Location: 3993705-3994026 bp Feature: domain Description: InsE Location: 3993705-3994026 bp Feature: gene Location: 3994226-3994507 bp Feature: domain Description: PHA02517 Location: 3994232-3994442 bp Feature: domain Description: PHA0251 7 Location: 3994232-3994442 bp Feature: gene Location: 3995099-3996055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3995372-3996011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3995372-399601 1 bp Feature: gene Location: 3996048-3996620 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3996054-3996366 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3996054-3996366 bp Feature: gene Location: 3996797-3997183 bp Feature: domain Description: PHA02517 Location: 3996800-3997181 bp Feature: domain Description: PHA0251 7 Location: 3996800-39971 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dps (COG0783), RVT-GII, GIIM (pfam08388), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), zinc_ribbon_11 (pfam11682), YesM (COG2972), Phage_integrase (pfam00589)
RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), InsE (COG2963), group_II_RT_mat (TIGR04416)