myRT

myRT report for GCA_900607975.1_ecoli015

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Seq: UWWX01000002.1 (357497 bp)
Overview 1 RT 1: 284508-290883 bp Neighborhood of RT #1 [284508, 290883] DUF5431 RVT_N RVT-GII PRK09183 COG4584 COG4584 RVT-GII GIIM HNHc Feature: gene Location: 284508-284705 bp Feature: gene Location: 284762-285067 bp Feature: domain Description: DUF5431 Location: 284765-284933 bp Feature: domain Description: DUF5431 Location: 284765-284933 bp Feature: gene Location: 285570-286157 bp Feature: domain Description: RVT_N Location: 285621-285861 bp Feature: domain Description: RVT_N Location: 285621 -285861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285909-286140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285909-2861 40 bp Feature: gene Location: 286197-286994 bp Feature: domain Description: PRK09183 Location: 286209-286944 bp Feature: domain Description: PRK091 83 Location: 286209-286944 bp Feature: gene Location: 287017-287937 bp Feature: domain Description: COG4584 Location: 287101-287629 bp Feature: domain Description: COG4584 Location: 2871 01 -287629 bp Feature: gene Location: 287786-288166 bp Feature: domain Description: COG4584 Location: 287789-288104 bp Feature: domain Description: COG4584 Location: 287789-2881 04 bp Feature: gene Location: 288299-289390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288311-288689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28831 1 -288689 bp Feature: domain Description: GIIM Note: maturase Location: 288740-288974 bp Feature: domain Description: GIIM Note: maturase Location: 288740-288974 bp Feature: domain Description: HNHc Note: nucleases Location: 289187-289346 bp Feature: domain Description: HNHc Note: nucleases Location: 2891 87-289346 bp Feature: gene Location: 290078-290398 bp Feature: gene Location: 290680-290883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5431 (pfam17496), RVT_N (pfam13655), RVT-GII, PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), GIIM (pfam08388), HNHc (smart00507)

Seq: UWWX01000001.1 (5087907 bp)
Overview 1 RT 1: 652600-656220 bp 2 RT 2: 859269-863096 bp 3 RT 3: 931869-934243 bp 4 RT 4: 1224308-1227664 bp 5 RT 5: 1242966-1245342 bp 6 RT 6: 1258406-1260517 bp 7 RT 7: 3344181-3348838 bp 8 RT 8: 4292597-4295820 bp 9 RT 9: 4696263-4698344 bp Neighborhood of RT #1 [652600, 656220] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [859269, 863098] RVT-GII GIIM PHA02517 PRK10736 Neighborhood of RT #3 [931869, 934243] PHA02517 RVT-GII GIIM RVT-GII YkfC Neighborhood of RT #4 [1224308, 1227729] PHA02517 RVT-GII GIIM RVT-GII PHA02517 Neighborhood of RT #5 [1242966, 1245342] PHA02517 group_II_RT_mat RVT-GII YkfC Neighborhood of RT #6 [1258406, 1260576] PHA02517 InsE RVT-GII PRK13856 Neighborhood of RT #7 [3344181, 3348838] DUF1737 Tra5 PHA02517 RVT-GII GIIM YkfC Neighborhood of RT #8 [4292597, 4295846] PHA02517 RVT-GII GIIM PHA02517 SH3 Neighborhood of RT #9 [4696263, 4698344] group_II_RT_mat RVT-GII YkfC Feature: gene Location: 652600-652986 bp Feature: domain Description: PHA02517 Location: 652660-652909 bp Feature: domain Description: PHA02 517 Location: 652 660-652 909 bp Feature: gene Location: 653008-653379 bp Feature: gene Location: 653673-655196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653946-654678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653946-654678 bp Feature: domain Description: GIIM Note: maturase Location: 654753-654951 bp Feature: domain Description: GIIM Note: maturase Location: 654753-654951 bp Feature: gene Location: 655373-655759 bp Feature: domain Description: PHA02517 Location: 655376-655757 bp Feature: domain Description: PHA02 517 Location: 655376-655757 bp Feature: gene Location: 655819-656220 bp Feature: gene Location: 859269-859397 bp Feature: gene Location: 859521-859685 bp Feature: gene Location: 860314-861837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860587-861319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860587-861319 bp Feature: domain Description: GIIM Note: maturase Location: 861394-861592 bp Feature: domain Description: GIIM Note: maturase Location: 861394-861592 bp Feature: gene Location: 862014-862400 bp Feature: domain Description: PHA02517 Location: 862017-862398 bp Feature: domain Description: PHA02 517 Location: 862 017-862 398 bp Feature: gene Location: 862472-863098 bp Feature: domain Description: PRK10736 Location: 862475-863096 bp Feature: domain Description: PRK10736 Location: 862 475-863096 bp Feature: gene Location: 931869-932315 bp Feature: domain Description: PHA02517 Location: 931872-932313 bp Feature: domain Description: PHA02 517 Location: 931872 -932 313 bp Feature: gene Location: 932432-932605 bp Feature: gene Location: 932660-933121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932669-932834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932 669-932 834 bp Feature: domain Description: GIIM Note: maturase Location: 932909-933089 bp Feature: domain Description: GIIM Note: maturase Location: 932 909-933089 bp Feature: gene Location: 933099-933599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933102-933501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933102 -933501 bp Feature: gene Location: 933599-933946 bp Feature: domain Description: YkfC Location: 933608-933911 bp Feature: domain Description: YkfC Location: 933608-933911 bp Feature: gene Location: 934040-934243 bp Feature: gene Location: 1224308-1224466 bp Feature: gene Location: 1224574-1225020 bp Feature: domain Description: PHA02517 Location: 1224577-1225018 bp Feature: domain Description: PHA02 517 Location: 12 2 4577-12 2 5018 bp Feature: gene Location: 1225137-1225742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225149-1225224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 5149-12 2 52 2 4 bp Feature: domain Description: GIIM Note: maturase Location: 1225299-1225518 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 52 99-12 2 5518 bp Feature: gene Location: 1225807-1226658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226080-1226536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 6080-12 2 6536 bp Feature: gene Location: 1226612-1227037 bp Feature: gene Location: 1227250-1227729 bp Feature: domain Description: PHA02517 Location: 1227310-1227664 bp Feature: domain Description: PHA02 517 Location: 12 2 7310-12 2 7664 bp Feature: gene Location: 1242966-1243430 bp Feature: domain Description: PHA02517 Location: 1242975-1243428 bp Feature: domain Description: PHA02 517 Location: 12 42 975-12 4342 8 bp Feature: gene Location: 1243607-1244095 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1243613-1243925 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12 43613-12 4392 5 bp Feature: gene Location: 1244110-1244697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1244113-1244674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 44113-12 44674 bp Feature: gene Location: 1244697-1245044 bp Feature: domain Description: YkfC Location: 1244706-1245009 bp Feature: domain Description: YkfC Location: 12 44706-12 45009 bp Feature: gene Location: 1245139-1245342 bp Feature: gene Location: 1258406-1258612 bp Feature: domain Description: PHA02517 Location: 1258409-1258610 bp Feature: domain Description: PHA02 517 Location: 12 58409-12 58610 bp Feature: gene Location: 1258779-1258988 bp Feature: domain Description: InsE Location: 1258791-1258977 bp Feature: domain Description: InsE Location: 12 58791-12 58977 bp Feature: gene Location: 1259170-1259463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1259299-1259389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 592 99-12 59389 bp Feature: gene Location: 1259636-1259920 bp Feature: gene Location: 1260274-1260576 bp Feature: domain Description: PRK13856 Location: 1260319-1260517 bp Feature: domain Description: PRK13856 Location: 12 60319-12 60517 bp Feature: gene Location: 3344181-3346034 bp Feature: domain Description: DUF1737 Location: 3344190-3344328 bp Feature: domain Description: DUF1737 Location: 3344190-334432 8 bp Feature: domain Description: Tra5 Location: 3344559-3345675 bp Feature: domain Description: Tra5 Location: 3344559-3345675 bp Feature: gene Location: 3346544-3346990 bp Feature: domain Description: PHA02517 Location: 3346547-3346988 bp Feature: domain Description: PHA02 517 Location: 3346547-3346988 bp Feature: gene Location: 3347107-3348282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347110-3347764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347110-3347764 bp Feature: domain Description: GIIM Note: maturase Location: 3347839-3348037 bp Feature: domain Description: GIIM Note: maturase Location: 3347839-3348037 bp Feature: gene Location: 3348282-3348629 bp Feature: domain Description: YkfC Location: 3348291-3348594 bp Feature: domain Description: YkfC Location: 33482 91-3348594 bp Feature: gene Location: 3348653-3348838 bp Feature: gene Location: 4292597-4292878 bp Feature: domain Description: PHA02517 Location: 4292603-4292813 bp Feature: domain Description: PHA02 517 Location: 42 92 603-42 92 813 bp Feature: gene Location: 4293258-4293437 bp Feature: gene Location: 4293466-4294989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4293739-4294471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 93739-42 94471 bp Feature: domain Description: GIIM Note: maturase Location: 4294546-4294744 bp Feature: domain Description: GIIM Note: maturase Location: 42 94546-42 94744 bp Feature: gene Location: 4295166-4295552 bp Feature: domain Description: PHA02517 Location: 4295169-4295550 bp Feature: domain Description: PHA02 517 Location: 42 95169-42 95550 bp Feature: gene Location: 4295652-4295846 bp Feature: domain Description: SH3 Location: 4295703-4295820 bp Feature: domain Description: SH3 Location: 42 95703-42 9582 0 bp Feature: gene Location: 4696263-4696427 bp Feature: gene Location: 4696534-4697106 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4696540-4696852 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4696540-4696852 bp Feature: gene Location: 4697121-4697708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4697124-4697676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469712 4-4697676 bp Feature: gene Location: 4697708-4698064 bp Feature: domain Description: YkfC Location: 4697747-4698029 bp Feature: domain Description: YkfC Location: 4697747-469802 9 bp Feature: gene Location: 4698078-4698344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10736 (DNA-protecting protein DprA), YkfC (COG3344), group_II_RT_mat (TIGR04416), InsE (COG2963), PRK13856 (two-component response regulator VirG; Provisional), DUF1737 (pfam08410), Tra5 (COG2801)
SH3 (smart00326)

Seq: UWWX01000004.1 (143431 bp)
Overview 1 RT 1: 34060-36845 bp 2 RT 2: 59201-62343 bp Neighborhood of RT #1 [34060, 36910] PHA02517 group_II_RT_mat RVT-GII PHA02517 Neighborhood of RT #2 [59201, 62345] PHA02517 YkfC RVT-GII group_II_RT_mat PHA02517 Feature: gene Location: 34060-34416 bp Feature: domain Description: PHA02517 Location: 34063-34372 bp Feature: domain Description: PHA02517 Location: 3 4063 -3 43 72 bp Feature: gene Location: 34533-35105 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 34539-34851 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 453 9-3 4851 bp Feature: gene Location: 35120-35686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35123-35666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5123 -3 5666 bp Feature: gene Location: 36073-36387 bp Feature: gene Location: 36629-36910 bp Feature: domain Description: PHA02517 Location: 36635-36845 bp Feature: domain Description: PHA02517 Location: 3 663 5-3 6845 bp Feature: gene Location: 59201-59680 bp Feature: domain Description: PHA02517 Location: 59261-59615 bp Feature: domain Description: PHA02517 Location: 59261-59615 bp Feature: gene Location: 60272-60544 bp Feature: domain Description: YkfC Location: 60302-60500 bp Feature: domain Description: YkfC Location: 603 02-60500 bp Feature: gene Location: 60580-61200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60583-61168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60583 -61168 bp Feature: gene Location: 61215-61703 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 61221-61533 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 61221-6153 3 bp Feature: gene Location: 61899-62345 bp Feature: domain Description: PHA02517 Location: 61902-62343 bp Feature: domain Description: PHA02517 Location: 61902-623 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), group_II_RT_mat (TIGR04416), RVT-GII, YkfC (COG3344)