myRT

myRT report for GCA_900608015.1_kpneu031

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Seq: UWXB01000003.1 (191884 bp)
Overview 1 RT 1: 29367-34352 bp 2 RT 2: 187101-189837 bp Neighborhood of RT #1 [29367, 34357] Antirestrict RVT-GII PRK10276 umuC Neighborhood of RT #2 [187101, 189848] RVT-GII PRK10276 Feature: gene Location: 29367-29792 bp Ori: VCY93773.1 Gene: klcA_2 Feature: domain Description: Antirestrict Location: 29502-29790 bp Feature: domain Description: Antirestrict Location: 29502-29790 bp Feature: gene Location: 30307-30537 bp Feature: gene Location: 30771-32258 bp Ori: VCY93777.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31176-31866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 76-31 866 bp Feature: gene Location: 32661-33086 bp Ori: VCY93779.1 Gene: lexA_6 Feature: domain Description: PRK10276 Location: 32664-33072 bp Feature: domain Description: PRK1 0276 Location: 32664-33072 bp Feature: gene Location: 33086-34357 bp Ori: VCY93781.1 Gene: dinB1_4 Feature: domain Description: umuC Location: 33089-34352 bp Feature: domain Description: umuC Location: 33089-34352 bp Feature: gene Location: 187101-187331 bp Feature: gene Location: 187836-188252 bp Feature: gene Location: 188444-188626 bp Ori: VCY94102.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188459-188573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88459-1 88573 bp Feature: gene Location: 188774-189031 bp Feature: gene Location: 189426-189848 bp Ori: VCY94106.1 Gene: lexA_7 Feature: domain Description: PRK10276 Location: 189429-189837 bp Feature: domain Description: PRK1 0276 Location: 1 89429-1 89837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: UWXB01000001.1 (5411289 bp)
Overview 1 RT 1: 3545348-3550758 bp 2 RT 2: 5074070-5080300 bp Neighborhood of RT #1 [3545348, 3550760] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [5074070, 5080305] YejM PRK09951 RVT-UG11 umuC PRK10276 Feature: gene Location: 3545348-3546487 bp Ori: VCY46792.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3545531-3546431 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3545531-3546431 bp Feature: gene Location: 3546658-3546900 bp Ori: VCY46793.1 Gene: dinI_2 Feature: domain Description: DinI Location: 3546709-3546889 bp Feature: domain Description: DinI Location: 3546709-3546889 bp Feature: gene Location: 3547306-3548994 bp Ori: VCY46794.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3547912-3548602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3547912 -3548602 bp Feature: gene Location: 3549073-3549492 bp Ori: VCY46795.1 Gene: lexA_2 Feature: domain Description: PRK10276 Location: 3549076-3549487 bp Feature: domain Description: PRK102 76 Location: 3549076-3549487 bp Feature: gene Location: 3549495-3550760 bp Ori: VCY46796.1 Gene: dinB1_1 Feature: domain Description: umuC Location: 3549498-3550758 bp Feature: domain Description: umuC Location: 3549498-3550758 bp Feature: gene Location: 5074070-5075830 bp Ori: VCY48210.1 Gene: yejM Feature: domain Description: YejM Location: 5074073-5075828 bp Feature: domain Description: YejM Location: 5074073-507582 8 bp Feature: gene Location: 5076169-5076837 bp Ori: VCY48211.1 Gene: yedK_2 Feature: domain Description: PRK09951 Location: 5076172-5076835 bp Feature: domain Description: PRK09951 Location: 5076172 -5076835 bp Feature: gene Location: 5077038-5077946 bp Ori: VCY48212.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 5077311-5077767 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 5077311-5077767 bp Feature: gene Location: 5078619-5079929 bp Ori: VCY48213.1 Gene: dinB1_2 Feature: domain Description: umuC Location: 5078667-5079927 bp Feature: domain Description: umuC Location: 5078667-507992 7 bp Feature: gene Location: 5079886-5080305 bp Ori: VCY48214.1 Gene: lexA_3 Feature: domain Description: PRK10276 Location: 5079889-5080300 bp Feature: domain Description: PRK102 76 Location: 5079889-5080300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YejM (COG3083), PRK09951 (hypothetical protein; Provisional), RVT-UG11

Seq: UWXB01000002.1 (351985 bp)
Overview 1 RT 1: 12722-16525 bp 2 RT 2: 58719-63893 bp 3 RT 3: 119379-123238 bp 4 RT 4: 328188-333332 bp Neighborhood of RT #1 [12722, 16525] HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII Neighborhood of RT #2 [58719, 63893] umuC PRK10276 RVT-GII InsQ Neighborhood of RT #3 [119379, 123238] HHA RVT-GII INT_Cre_C Neighborhood of RT #4 [328188, 333332] COG3464 DDE_Tnp_ISL3 RVT-GII Feature: gene Location: 12722-13699 bp Ori: VCY92563.1 Feature: domain Description: HTH_Tnp_ISL3 Location: 12755-12902 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 12755-12902 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 12953-13658 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 12953 -13 658 bp Feature: gene Location: 13672-14250 bp Feature: gene Location: 14844-15227 bp Ori: VCY92568.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14868-15123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14868-15123 bp Feature: gene Location: 15456-16007 bp Feature: gene Location: 16016-16525 bp Feature: gene Location: 58719-59990 bp Ori: VCY92666.1 Gene: dinB1_3 Feature: domain Description: umuC Location: 58722-59982 bp Feature: domain Description: umuC Location: 58722-59982 bp Feature: gene Location: 59990-60412 bp Ori: VCY92668.1 Gene: lexA_5 Feature: domain Description: PRK10276 Location: 59996-60398 bp Feature: domain Description: PRK10276 Location: 59996-603 98 bp Feature: gene Location: 60498-61985 bp Ori: VCY92670.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60903-61593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60903 -61593 bp Feature: gene Location: 62676-63029 bp Ori: VCY92672.1 Feature: domain Description: InsQ Location: 62730-62979 bp Feature: domain Description: InsQ Location: 6273 0-62979 bp Feature: gene Location: 63405-63893 bp Feature: gene Location: 119379-119633 bp Ori: VCY92859.1 Gene: hha_2 Feature: domain Description: HHA Location: 119430-119613 bp Feature: domain Description: HHA Location: 11943 0-119613 bp Feature: gene Location: 120146-120649 bp Feature: gene Location: 120896-121633 bp Ori: VCY92862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120920-121241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120920-121241 bp Feature: gene Location: 121719-122855 bp Ori: VCY92864.1 Feature: domain Description: INT_Cre_C Location: 122142-122796 bp Feature: domain Description: INT_Cre_C Location: 122142-122796 bp Feature: gene Location: 122921-123238 bp Feature: gene Location: 328188-329027 bp Ori: VCY93366.1 Feature: domain Description: COG3464 Location: 328275-328953 bp Feature: domain Description: COG3 464 Location: 3 28275-3 28953 bp Feature: gene Location: 329024-329401 bp Ori: VCY93367.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 329027-329360 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3 29027-3 293 60 bp Feature: gene Location: 329927-331168 bp Ori: VCY93368.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330209-330899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 0209-3 3 0899 bp Feature: gene Location: 331165-331401 bp Feature: gene Location: 333078-333332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), InsQ (COG0675), HHA (pfam05321), INT_Cre_C (cd00799), COG3464 (Transposase )