myRT

myRT report for GCA_900608105.1_ecoli022

Download annotations/find similar RTs

Seq: UWXJ01000005.1 (51125 bp)
Overview 1 RT 1: 16799-21409 bp Neighborhood of RT #1 [16799, 21414] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 16799-16981 bp Feature: gene Location: 17210-17419 bp Feature: gene Location: 17554-19455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17821-18652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7821 -1 8652 bp Feature: domain Description: Intron_maturas2 Location: 18766-19024 bp Feature: domain Description: Intron_maturas2 Location: 1 8766-1 9024 bp Feature: domain Description: HNHc Note: nucleases Location: 19198-19360 bp Feature: domain Description: HNHc Note: nucleases Location: 1 91 98-1 9360 bp Feature: gene Location: 19683-20927 bp Feature: gene Location: 20980-21414 bp Feature: domain Description: psiB Location: 20983-21409 bp Feature: domain Description: psiB Location: 20983-21 409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)

Seq: UWXJ01000002.1 (173664 bp)
Overview 1 RT 1: 945-4129 bp 2 RT 2: 134934-138570 bp Neighborhood of RT #1 [945, 4129] PRK15442 PRK15442 RVT-GII RVT-GII GIIM ParE_toxin Neighborhood of RT #2 [134934, 138570] PRK15442 RVT-GII ParE_toxin Feature: gene Location: 945-1193 bp Feature: domain Description: PRK15442 Location: 969-1155 bp Feature: domain Description: PRK15442 Location: 969-1155 bp Feature: gene Location: 1196-1381 bp Feature: domain Description: PRK15442 Location: 1208-1376 bp Feature: domain Description: PRK15442 Location: 12 08-1376 bp Feature: gene Location: 1700-2581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2276-2570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 76-2 570 bp Feature: gene Location: 2654-3385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2672-2822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 672 -2 82 2 bp Feature: domain Description: GIIM Note: maturase Location: 3071-3227 bp Feature: domain Description: GIIM Note: maturase Location: 3071-32 2 7 bp Feature: gene Location: 3636-3836 bp Feature: domain Description: ParE_toxin Location: 3651-3831 bp Feature: domain Description: ParE_toxin Location: 3651-3831 bp Feature: gene Location: 3962-4129 bp Feature: gene Location: 134934-135794 bp Feature: domain Description: PRK15442 Location: 134943-135792 bp Feature: domain Description: PRK15442 Location: 134943-135792 bp Feature: gene Location: 136125-136397 bp Feature: gene Location: 136408-137823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136693-137380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136693-137380 bp Feature: gene Location: 138074-138277 bp Feature: domain Description: ParE_toxin Location: 138089-138272 bp Feature: domain Description: ParE_toxin Location: 138089-1382 72 bp Feature: gene Location: 138403-138570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15442 (beta-lactamase TEM; Provisional), RVT-GII, GIIM (pfam08388), ParE_toxin (pfam05016)

Seq: UWXJ01000003.1 (122052 bp)
Overview 1 RT 1: 77081-80804 bp Neighborhood of RT #1 [77081, 80809] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 77081-77287 bp Feature: gene Location: 77621-77830 bp Feature: gene Location: 77965-79866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78232-79063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7823 2-79063 bp Feature: domain Description: Intron_maturas2 Location: 79177-79435 bp Feature: domain Description: Intron_maturas2 Location: 79177-7943 5 bp Feature: domain Description: HNHc Note: nucleases Location: 79609-79771 bp Feature: domain Description: HNHc Note: nucleases Location: 79609-79771 bp Feature: gene Location: 80061-80513 bp Feature: domain Description: PRK13732 Location: 80067-80511 bp Feature: domain Description: PRK13 73 2 Location: 80067-80511 bp Feature: gene Location: 80576-80809 bp Feature: domain Description: DUF905 Location: 80606-80804 bp Feature: domain Description: DUF905 Location: 80606-80804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: UWXJ01000001.1 (5342016 bp)
Overview 1 RT 1: 2706967-2711861 bp 2 RT 2: 3140250-3145958 bp 3 RT 3: 3161866-3164278 bp 4 RT 4: 3200909-3204641 bp 5 RT 5: 3949815-3955140 bp Neighborhood of RT #1 [2706967, 2712118] AAA_21 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Neighborhood of RT #2 [3140250, 3145958] PRK09692 Tra5 RVT-GII GIIM Neighborhood of RT #3 [3161866, 3164352] PHA02517 InsE RVT-GII RVT-GII group_II_RT_mat IS285 Neighborhood of RT #4 [3200909, 3204641] RVT-UG1 Neighborhood of RT #5 [3949815, 3955256] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 2706967-2707362 bp Feature: domain Description: AAA_21 Location: 2707054-2707276 bp Feature: domain Description: AAA_21 Location: 2707054 -2707276 bp Feature: gene Location: 2708582-2708767 bp Feature: gene Location: 2708875-2709135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2708884-2708992 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2708884 -2708992 bp Feature: gene Location: 2710353-2711471 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2711124-2711295 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2711124 -2711295 bp Feature: gene Location: 2711642-2712118 bp Feature: domain Description: HTH_23 Location: 2711720-2711861 bp Feature: domain Description: HTH_23 Location: 2711720-2711861 bp Feature: gene Location: 3140250-3141440 bp Feature: domain Description: PRK09692 Location: 3140256-3141417 bp Feature: domain Description: PRK09692 Location: 314 0256-314 14 17 bp Feature: gene Location: 3142845-3143276 bp Feature: domain Description: Tra5 Location: 3142851-3143268 bp Feature: domain Description: Tra5 Location: 314 2851-314 3268 bp Feature: gene Location: 3143387-3144910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143660-3144392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314 3660-314 4 392 bp Feature: domain Description: GIIM Note: maturase Location: 3144467-3144665 bp Feature: domain Description: GIIM Note: maturase Location: 314 4 4 67-314 4 665 bp Feature: gene Location: 3145204-3145575 bp Feature: gene Location: 3145578-3145958 bp Feature: gene Location: 3161866-3162567 bp Feature: domain Description: PHA02517 Location: 3161884-3162562 bp Feature: domain Description: PHA02517 Location: 3161884 -3162562 bp Feature: gene Location: 3162708-3163010 bp Feature: domain Description: InsE Location: 3162711-3162996 bp Feature: domain Description: InsE Location: 3162711-3162996 bp Feature: gene Location: 3163049-3163252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163094-3163250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163094 -3163250 bp Feature: gene Location: 3163286-3163522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163289-3163469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3163289-31634 69 bp Feature: gene Location: 3163515-3163727 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3163518-3163716 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3163518-3163716 bp Feature: gene Location: 3163870-3164352 bp Feature: domain Description: IS285 Location: 3163900-3164278 bp Feature: domain Description: IS285 Location: 3163900-3164 278 bp Feature: gene Location: 3200909-3202303 bp Feature: gene Location: 3202311-3203102 bp Feature: gene Location: 3203305-3203781 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3203317-3203572 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3203317-3203572 bp Feature: gene Location: 3203921-3204226 bp Feature: gene Location: 3204300-3204641 bp Feature: gene Location: 3949815-3950966 bp Feature: domain Description: HTH_38 Location: 3949824-3949938 bp Feature: domain Description: HTH_38 Location: 394 9824 -394 9938 bp Feature: domain Description: Tra8 Location: 3949974-3950955 bp Feature: domain Description: Tra8 Location: 394 9974 -3950955 bp Feature: gene Location: 3951097-3951522 bp Feature: domain Description: PHA02517 Location: 3951121-3951457 bp Feature: domain Description: PHA02517 Location: 3951121-39514 57 bp Feature: gene Location: 3952115-3953638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952388-3953120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952388-3953120 bp Feature: domain Description: GIIM Note: maturase Location: 3953195-3953393 bp Feature: domain Description: GIIM Note: maturase Location: 3953195-3953393 bp Feature: gene Location: 3953803-3953961 bp Feature: domain Description: PHA02517 Location: 3953806-3953926 bp Feature: domain Description: PHA02517 Location: 3953806-3953926 bp Feature: gene Location: 3954180-3955256 bp Feature: domain Description: COG3547 Location: 3954219-3955140 bp Feature: domain Description: COG354 7 Location: 3954 219-395514 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384), PRK09692 (Integrase; provisional), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)
group_II_RT_mat (TIGR04416), IS285 (COG3328), RVT-UG1, HTH_38 (pfam13936), Tra8 (COG2826), COG3547 (Transposase )