myRT

myRT report for GCA_900608315.1_kpneu044

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Seq: UWYA01000003.1 (139638 bp)
Overview 1 RT 1: 67960-75341 bp Neighborhood of RT #1 [67960, 75388] InsE PHA02517 RVT-GII RVT-GII GIIM Rve CHASE4 COG5001 Feature: gene Location: 67960-68232 bp Feature: domain Description: InsE Location: 67969-68218 bp Feature: domain Description: InsE Location: 67969-6821 8 bp Feature: gene Location: 68288-68713 bp Feature: domain Description: PHA02517 Location: 68312-68648 bp Feature: domain Description: PHA0251 7 Location: 6831 2-68648 bp Feature: gene Location: 69305-70351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69578-70217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69578-7021 7 bp Feature: gene Location: 70419-71075 bp Feature: gene Location: 71101-71301 bp Feature: gene Location: 71428-71634 bp Feature: gene Location: 71721-72380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71739-71862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 739-71 862 bp Feature: domain Description: GIIM Note: maturase Location: 71937-72156 bp Feature: domain Description: GIIM Note: maturase Location: 71 937-721 56 bp Feature: gene Location: 72420-73124 bp Feature: domain Description: Rve Location: 72423-73068 bp Feature: domain Description: Rve Location: 72423-73068 bp Feature: gene Location: 73136-75388 bp Feature: domain Description: CHASE4 Location: 73208-74048 bp Feature: domain Description: CHASE4 Location: 73208-74048 bp Feature: domain Description: COG5001 Location: 74405-75341 bp Feature: domain Description: COG5001 Location: 74405-75341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rve (COG3316), CHASE4 (pfam05228), COG5001 (Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain )

Seq: UWYA01000001.1 (5367925 bp)
Overview 1 RT 1: 4897738-4904591 bp Neighborhood of RT #1 [4897738, 4904608] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 4897738-4898403 bp Feature: domain Description: INT_P4_C Location: 4897843-4898401 bp Feature: domain Description: INT_P4_C Location: 4897843-4898401 bp Feature: gene Location: 4898664-4899104 bp Feature: domain Description: Integrase_1 Location: 4898670-4898886 bp Feature: domain Description: Integrase_1 Location: 4898670-4898886 bp Feature: gene Location: 4899161-4901239 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4899569-4900013 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4899569-4900013 bp Feature: gene Location: 4901239-4903848 bp Feature: domain Description: FimD Location: 4901296-4903837 bp Feature: domain Description: FimD Location: 49012 96-4903837 bp Feature: gene Location: 4903880-4904608 bp Feature: domain Description: FimC Location: 4903928-4904591 bp Feature: domain Description: FimC Location: 490392 8-4904591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: UWYA01000004.1 (109455 bp)
Overview 1 RT 1: 64749-68805 bp Neighborhood of RT #1 [64749, 68805] umuC PRK10276 RVT-GII Feature: gene Location: 64749-66020 bp Feature: domain Description: umuC Location: 64752-66012 bp Feature: domain Description: umuC Location: 64752-66012 bp Feature: gene Location: 66020-66778 bp Feature: domain Description: PRK10276 Location: 66611-66761 bp Feature: domain Description: PRK10276 Location: 66611-66761 bp Feature: gene Location: 66899-67885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67172-67811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67172-67811 bp Feature: gene Location: 68025-68177 bp Feature: gene Location: 68512-68805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII