myRT

myRT report for GCA_900608345.1_kpneu047

Download annotations/find similar RTs

Seq: UWYE01000004.1 (81940 bp)
Overview 1 RT 1: 57031-58794 bp Neighborhood of RT #1 [57031, 58794] RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 57031-57192 bp Feature: gene Location: 57238-57399 bp Feature: gene Location: 57541-57759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57547-57742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57547-57742 bp Feature: gene Location: 57838-58035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57871-57943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57871 -57943 bp Feature: gene Location: 58167-58520 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58173-58473 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 581 73-58473 bp Feature: gene Location: 58504-58794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: UWYE01000002.1 (126629 bp)
Overview 1 RT 1: 116737-121104 bp Neighborhood of RT #1 [116737, 121205] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 116737-117039 bp Feature: domain Description: InsE Location: 116746-117028 bp Feature: domain Description: InsE Location: 116746-11702 8 bp Feature: gene Location: 117066-117419 bp Feature: domain Description: PHA02517 Location: 117090-117402 bp Feature: domain Description: PHA02 517 Location: 117090-117402 bp Feature: gene Location: 118082-119605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118355-119087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118355-119087 bp Feature: domain Description: GIIM Note: maturase Location: 119162-119360 bp Feature: domain Description: GIIM Note: maturase Location: 119162 -119360 bp Feature: gene Location: 119740-119928 bp Feature: domain Description: PHA02517 Location: 119743-119890 bp Feature: domain Description: PHA02 517 Location: 119743-119890 bp Feature: gene Location: 120147-121205 bp Feature: domain Description: COG3547 Location: 120186-121104 bp Feature: domain Description: COG3547 Location: 12 0186-12 1104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: UWYE01000001.1 (5404314 bp)
Overview 1 RT 1: 1458748-1460367 bp 2 RT 2: 2048511-2052915 bp 3 RT 3: 2989803-2998707 bp 4 RT 4: 3174068-3179516 bp 5 RT 5: 3284303-3288826 bp 6 RT 6: 3572335-3576829 bp 7 RT 7: 4797831-4805526 bp Neighborhood of RT #1 [1458748, 1460367] RVT-GII Neighborhood of RT #2 [2048511, 2052915] RVT-GII Neighborhood of RT #3 [2989803, 2998707] PRK10276 group_II_RT_mat RVT-GII RVT-GII PinE Neighborhood of RT #4 [3174068, 3179569] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3284303, 3288828] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #6 [3572335, 3576843] RVT-GII RVT-GII IS5 Neighborhood of RT #7 [4797831, 4805540] HTH_Tnp_1 Tra5 RVT-GII IS5 PRK09692 Feature: gene Location: 1458748-1459653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458757-1459429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458757-1459429 bp Feature: gene Location: 1459736-1459987 bp Feature: gene Location: 1459999-1460367 bp Feature: gene Location: 2048511-2048774 bp Feature: gene Location: 2050744-2051010 bp Feature: gene Location: 2051221-2052111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051227-2051668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051227-2051668 bp Feature: gene Location: 2052311-2052550 bp Feature: gene Location: 2052592-2052915 bp Feature: gene Location: 2989803-2990309 bp Feature: domain Description: PRK10276 Location: 2989893-2990304 bp Feature: domain Description: PRK10276 Location: 2989893 -29903 04 bp Feature: gene Location: 2990423-2990779 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2990480-2990672 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2990480-2990672 bp Feature: gene Location: 2990779-2991312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2990785-2991304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2990785-29913 04 bp Feature: gene Location: 2991523-2991786 bp Feature: gene Location: 2992211-2993827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2992745-2993435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2992745-2993 43 5 bp Feature: gene Location: 2995090-2995662 bp Feature: domain Description: PinE Location: 2995093-2995654 bp Feature: domain Description: PinE Location: 2995093 -2995654 bp Feature: gene Location: 2995753-2998707 bp Feature: gene Location: 3174068-3175333 bp Feature: domain Description: umuC Location: 3174071-3175331 bp Feature: domain Description: umuC Location: 3 174071-3 1753 3 1 bp Feature: gene Location: 3175336-3175755 bp Feature: domain Description: PRK10276 Location: 3175339-3175750 bp Feature: domain Description: PRK10276 Location: 3 1753 3 9-3 175750 bp Feature: gene Location: 3175834-3177318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3176236-3176926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 17623 6-3 176926 bp Feature: gene Location: 3177936-3178178 bp Feature: domain Description: DinI Location: 3177987-3178167 bp Feature: domain Description: DinI Location: 3 177987-3 178167 bp Feature: gene Location: 3178340-3179569 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3178613-3179516 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3 178613 -3 179516 bp Feature: gene Location: 3284303-3284863 bp Feature: domain Description: PRK10598 Location: 3284306-3284861 bp Feature: domain Description: PRK10598 Location: 3 2843 06-3 284861 bp Feature: gene Location: 3284989-3286035 bp Feature: domain Description: PRK05451 Location: 3285004-3286030 bp Feature: domain Description: PRK05451 Location: 3 285004-3 28603 0 bp Feature: gene Location: 3286129-3287613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3286531-3287221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 28653 1-3 287221 bp Feature: gene Location: 3288019-3288270 bp Feature: domain Description: PRK10597 Location: 3288022-3288259 bp Feature: domain Description: PRK10597 Location: 3 288022-3 288259 bp Feature: gene Location: 3288571-3288828 bp Feature: domain Description: bssS Location: 3288577-3288826 bp Feature: domain Description: bssS Location: 3 288577-3 288826 bp Feature: gene Location: 3572335-3572574 bp Feature: gene Location: 3572689-3572922 bp Feature: gene Location: 3572976-3573878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3573378-3573711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 573 3 78-3 573 711 bp Feature: gene Location: 3573854-3574459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3573857-3574067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 573 857-3 574067 bp Feature: gene Location: 3574583-3574753 bp Feature: gene Location: 3575863-3576843 bp Feature: domain Description: IS5 Location: 3576052-3576829 bp Feature: domain Description: IS5 Location: 3 576052-3 576829 bp Feature: gene Location: 4797831-4798094 bp Feature: domain Description: HTH_Tnp_1 Location: 4797837-4798041 bp Feature: domain Description: HTH_Tnp_1 Location: 479783 7-4798041 bp Feature: gene Location: 4798121-4798951 bp Feature: domain Description: Tra5 Location: 4798145-4798910 bp Feature: domain Description: Tra5 Location: 4798145-4798910 bp Feature: gene Location: 4799783-4801267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4800185-4800875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4800185-4800875 bp Feature: gene Location: 4801949-4802929 bp Feature: domain Description: IS5 Location: 4802138-4802915 bp Feature: domain Description: IS5 Location: 480213 8-4802915 bp Feature: gene Location: 4804524-4805540 bp Feature: domain Description: PRK09692 Location: 4804536-4805526 bp Feature: domain Description: PRK09692 Location: 480453 6-4805526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), group_II_RT_mat (TIGR04416), PinE (COG1961), umuC (PRK03609), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional)
bssS (PRK12301), IS5 (COG3039), HTH_Tnp_1 (pfam01527), Tra5 (COG2801), PRK09692 (Integrase; provisional)