myRT

myRT report for GCA_900608455.1_kpneu055

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Seq: UWYO01000001.1 (5476300 bp)
Overview 1 RT 1: 43074-46297 bp 2 RT 2: 123984-129704 bp 3 RT 3: 647875-652023 bp 4 RT 4: 3713026-3716101 bp 5 RT 5: 5464807-5468389 bp Neighborhood of RT #1 [43074, 46297] RVT-GII Neighborhood of RT #2 [123984, 129712] PRK10276 RVT-GII RVT-GII RVT-GII PinE Neighborhood of RT #3 [647875, 652043] DinI RVT-GII int YbjK Neighborhood of RT #4 [3713026, 3716106] PRK09678 RVT-UG11 SmpB PRK10724 Neighborhood of RT #5 [5464807, 5468445] DinI RVT-GII Laminin_G_3 Feature: gene Location: 43074-43358 bp Feature: gene Location: 43757-43906 bp Feature: gene Location: 43906-44628 bp Ori: VDA52209.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44023-44620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44023-44620 bp Feature: gene Location: 44649-44915 bp Feature: gene Location: 45788-46297 bp Feature: gene Location: 123984-124607 bp Ori: VDA52411.1 Gene: lexA_1 Feature: domain Description: PRK10276 Location: 124191-124602 bp Feature: domain Description: PRK1 0276 Location: 1 241 91 -1 24602 bp Feature: gene Location: 124761-124985 bp Feature: gene Location: 125085-125966 bp Ori: VDA52415.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125490-125862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25490-1 25862 bp Feature: gene Location: 126310-126513 bp Feature: gene Location: 126510-127124 bp Ori: VDA52419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126534-126759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26534-1 26759 bp Feature: gene Location: 127273-127584 bp Ori: VDA52421.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127390-127534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27390-1 27534 bp Feature: gene Location: 127605-127871 bp Feature: gene Location: 129263-129712 bp Ori: VDA52425.1 Gene: hin_1 Feature: domain Description: PinE Location: 129272-129704 bp Feature: domain Description: PinE Location: 1 29272-1 29704 bp Feature: gene Location: 647875-648108 bp Ori: VDA53575.1 Gene: dinI_4 Feature: domain Description: DinI Location: 647917-648103 bp Feature: domain Description: DinI Location: 64791 7-6481 03 bp Feature: gene Location: 648119-648307 bp Feature: gene Location: 648408-650018 bp Ori: VDA53580.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648936-649626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 648936-649626 bp Feature: gene Location: 650305-651357 bp Ori: VDA53582.1 Gene: xerD_2 Feature: domain Description: int Location: 650308-651307 bp Feature: domain Description: int Location: 650308-651 307 bp Feature: gene Location: 651480-652043 bp Ori: VDA53584.1 Gene: rcdA Feature: domain Description: YbjK Location: 651486-652023 bp Feature: domain Description: YbjK Location: 651 486-652023 bp Feature: gene Location: 3713026-3713244 bp Ori: VDA58472.1 Feature: domain Description: PRK09678 Location: 3713029-3713227 bp Feature: domain Description: PRK09678 Location: 371 3029-371 3227 bp Feature: gene Location: 3713506-3713679 bp Feature: gene Location: 3713648-3714421 bp Ori: VDA58474.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3713783-3714236 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 371 3783-371 4236 bp Feature: gene Location: 3715037-3715519 bp Ori: VDA58475.1 Gene: smpB Feature: domain Description: SmpB Location: 3715067-3715511 bp Feature: domain Description: SmpB Location: 371 5067-371 551 1 bp Feature: gene Location: 3715669-3716106 bp Ori: VDA58476.1 Gene: ratA Feature: domain Description: PRK10724 Location: 3715672-3716101 bp Feature: domain Description: PRK1 0724 Location: 371 5672-371 61 01 bp Feature: gene Location: 5464807-5464998 bp Ori: VDA60143.1 Gene: dinI_6 Feature: domain Description: DinI Location: 5464810-5464990 bp Feature: domain Description: DinI Location: 546481 0-5464990 bp Feature: gene Location: 5465221-5465505 bp Feature: gene Location: 5465704-5466780 bp Ori: VDA60146.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5465821-5466511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5465821 -546651 1 bp Feature: gene Location: 5467508-5467717 bp Feature: gene Location: 5467714-5468445 bp Ori: VDA60149.1 Feature: domain Description: Laminin_G_3 Location: 5468050-5468389 bp Feature: domain Description: Laminin_G_3 Location: 5468050-5468389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), DinI (pfam06183), int (PHA02601), YbjK (COG3226), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)
Laminin_G_3 (pfam13385)

Seq: UWYO01000003.1 (65951 bp)
Overview 1 RT 1: 6513-11517 bp 2 RT 2: 18110-23233 bp Neighborhood of RT #1 [6513, 11522] umuC PRK10276 RVT-GII ArdC Neighborhood of RT #2 [18110, 23244] Phage_integrase COG3547 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 6513-7784 bp Ori: VDA77515.1 Gene: dinB1_4 Feature: domain Description: umuC Location: 6516-7776 bp Feature: domain Description: umuC Location: 6516-7776 bp Feature: gene Location: 7784-8215 bp Ori: VDA77516.1 Gene: lexA_5 Feature: domain Description: PRK10276 Location: 7835-8198 bp Feature: domain Description: PRK102 76 Location: 7835-8198 bp Feature: gene Location: 8697-9323 bp Ori: VDA77517.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9018-9309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9018-9309 bp Feature: gene Location: 9400-9783 bp Feature: gene Location: 10557-11522 bp Ori: VDA77519.1 Gene: traC_5 Feature: domain Description: ArdC Location: 10683-11517 bp Feature: domain Description: ArdC Location: 10683-11517 bp Feature: gene Location: 18110-18457 bp Ori: VDA77531.1 Gene: xerC_4 Feature: domain Description: Phage_integrase Location: 18116-18344 bp Feature: domain Description: Phage_integrase Location: 18116-18344 bp Feature: gene Location: 18757-19833 bp Ori: VDA77532.1 Feature: domain Description: COG3547 Location: 18796-19717 bp Feature: domain Description: COG3547 Location: 18796-19717 bp Feature: gene Location: 20375-21898 bp Ori: VDA77533.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20648-21380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0648-2 1380 bp Feature: domain Description: GIIM Note: maturase Location: 21455-21653 bp Feature: domain Description: GIIM Note: maturase Location: 2 1455-2 1653 bp Feature: gene Location: 22490-22729 bp Ori: VDA77534.1 Feature: domain Description: PHA02517 Location: 22493-22664 bp Feature: domain Description: PHA02 517 Location: 2 2 493-2 2 664 bp Feature: gene Location: 22942-23244 bp Ori: VDA77535.1 Feature: domain Description: InsE Location: 22951-23233 bp Feature: domain Description: InsE Location: 2 2 951-2 32 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227), Phage_integrase (pfam00589), COG3547 (Transposase ), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: UWYO01000002.1 (270174 bp)
Overview 1 RT 1: 213843-218834 bp Neighborhood of RT #1 [213843, 218836] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 213843-215114 bp Ori: VDA77425.1 Gene: dinB1_3 Feature: domain Description: umuC Location: 213846-215109 bp Feature: domain Description: umuC Location: 213 846-215109 bp Feature: gene Location: 215114-215539 bp Ori: VDA77426.1 Gene: lexA_4 Feature: domain Description: PRK10276 Location: 215117-215525 bp Feature: domain Description: PRK10276 Location: 215117-215525 bp Feature: gene Location: 215940-217073 bp Ori: VDA77427.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216345-216957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2163 45-216957 bp Feature: gene Location: 217660-217890 bp Feature: gene Location: 218411-218836 bp Ori: VDA77429.1 Gene: klcA_2 Feature: domain Description: Antirestrict Location: 218546-218834 bp Feature: domain Description: Antirestrict Location: 218546-21883 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)